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00:16 Oh, no, I see. OK, folks. Uh oh

01:08 sorry. Cool. All right. . Testing. Here we go.

01:17 right, welcome folks. Um Today starting uh unit three, we just

01:23 like a little bit to do um just to finish up unit one.

01:30 I know there was like, for reason there was like two,

01:33 they're, they're both the same unit quiz. It was both the

01:38 So whichever one you do, I know why that happened, but whichever

01:41 you do your, your grades So uh if you haven't done it

01:45 and you see two things, it matter which one you do,

01:48 they're both identical. OK. Um obviously the stuff this week um is

01:54 on the exam. Ok. So is one of the flip classes.

01:58 basically gonna be basically just the clipper questions. OK. So it's

02:04 to be all framed around um pro structure. Um If you've gone through

02:12 bio when you went through the eukaryotic , right? Kind of similar to

02:17 . Um But uh anyway, you a bunch of questions. So uh

02:24 see what else. So do So again, I'll send out the

02:27 . I haven't done it yet uh you of the same stuff. So

02:31 exam. So um there's two ways can take an exam at cost.

02:40 . Uh And I've done both. what I'm doing uh So what I

02:44 by that is you can take it what's called the uh CCS interface.

02:50 ? Which is kind of analogous to um the uh class, of

02:55 where the way they used to do , right? So they switch over

02:58 CCS which integrates with canvas. Uh what I'm doing, uh which I

03:03 is better because it basically gonna it's gonna be like you taking a

03:08 uh like you're doing on campus, ? So it's all gonna be through

03:11 . So what you see? So two things, right? I think

03:15 you go on the classic computer, ? You see this thing called a

03:20 , right? I like you. , it, it's, it's,

03:22 was labeled to game one, but la the placeholder to make sure that

03:27 this thing is, there's one for exam. It's, it's only for

03:31 . Casa uses that to enable you schedule exams at CASA. That's,

03:37 the sole purpose of this thing. ? So I modified it to tell

03:40 , OK? That this is not exam. OK? So you'll be

03:44 your CASA computer in Casa and you'll that and then you go to this

03:48 one here. Ok. You're going take the exam here. All

03:51 And I'll put it in the email and send it out again on

03:54 So you're not, you know, it doesn't that complicated, right?

03:58 like, it's just like you take exam on campus, like you've been

04:02 you quiz, unit, unit quiz week, last week. Um,

04:06 it has a respondent lockdown browser. don't need to worry about that because

04:10 , they are, it's already on computer, right? So you just

04:13 up and take the exam. That's you're doing, right? Um So

04:17 , it's so the interface will look like you're taking a weekly quiz or

04:22 or unit quiz. That's all. . So, uh I think that's

04:27 to do it this way. Um if you have to make up an

04:31 or something. It's easier. um anyway, so I just wanna

04:34 you aware of that. OK. right. So again, I'll send

04:38 out in the email. Uh Is anything that complicated? Ok. Um

04:43 yeah, but it's kind of the time I'm doing it this way.

04:48 did it last semester once remotely, that was for a different reason.

04:52 anyway, so this is like I , this, this is what we'll

04:55 and uh again, I'll send this in the email. We'll talk about

04:58 again on Wednesday. So you should uh good to go. All

05:02 So what else was there? I that was it any uh, questions

05:09 anything, any questions concern? So remember every, if you're puzzled

05:14 , so what's gonna be on on this exam exam? One review

05:17 ? Ok. Um All right. think I attached it to the email

05:21 week. So, uh obviously it's cost but um I'm sticking to that

05:26 . If it's not, if it's on there, it's all in the

05:29 . OK. Uh So let's just up this last bit of. So

05:37 in uh so we've been talking so again, this, this stuff

05:42 chapter 22 is really just an extension the me metabolism stuff. We've been

05:49 about 13 or 14. We're just at it in kind of this context

05:56 natural environment, how it, how , how it applies in nature.

06:00 . So, uh so we in the first half of that was like

06:05 treatment, right? Bod uh that the last half was kind of was

06:13 uh nitrogen cycle. OK. And remember the importance of that,

06:17 So all sides of these, the sides of the triangle and the modification

06:25 is not really a side of the . Um So just see the three

06:29 here and that, that um these all um I just summarize this kind

06:35 quickly, I'd say it's really about uh utilizing and making various forms of

06:43 available. The easiest way I can it OK. Um It begins of

06:49 , with getting it into the environment through fixation right. Thereafter, it's

06:54 different bacterial metabolisms forming different types. remember the more reduced forms are served

07:05 donors, right? So they're gonna at the front feeding electron transport

07:09 right? It's the way they produce get energy from OK. Lithos litho

07:15 , OK. The um then those forms, more oxidized forms become,

07:21 available as receptors, right? As , excuse me, as acceptors

07:26 to sustain a uh an aerobic anaerobic respiration. OK. That's the

07:32 notification site. OK. So, so you're kind of remembering the roles

07:38 each nitrogen form. OK? And uh on top of this assimilation,

07:47 , assimilation, right? So these uh metabolisms that can um the organism

07:53 them uh forms the product and then has enough of it doesn't, doesn't

08:01 it and it's let go. It's dissimulator, but it is then available

08:07 others that can assimilate to take it , right? So you have both

08:11 these processes going on, right? uh of course, it's sim simulation

08:16 these different n forms, right? um you know, is,

08:22 is part of a healthy ecosystem, ? So you have uh plants and

08:26 that require nitrate, nitrate as they get it, of course,

08:31 microbes doing that bottom part of the . OK. Um We get our

08:38 typically from breaking down proteins and things our food, OK, that releases

08:43 , which is then incorporate into our molecules. And so that's a

08:47 So remember, you know, the line of this is what is,

08:51 is in, in, in, in DNA, it's an RN

08:54 it's in protein. So obviously, a, a vital nutrient.

09:00 And so, um so we look so at the end of the end

09:05 end of 22 is kind of focused on this part. OK. In

09:11 of a um in a biological, not biological but um obviously biological,

09:17 in a um uh natural uh phenomenon of context, right? So here's

09:26 example, I'm trying to say not well is real data uh showing the

09:32 of unification, which is a process leads to nitrogen loss right, from

09:38 environment, right? Because it goes as N two eventually. OK.

09:43 So, uh but also we can one of the um uh greenhouse gasses

09:50 those natural compounds is N 20, ? So that's released as part of

09:55 . And so, uh so kind of um how this all fits

10:01 the unification, the presence of high right can come from um a combination

10:07 uh runoff uh fertilizer runoff coupled with organic material dumped into bodies of

10:17 Uh the organic material contributes to the bod, right? So remember that

10:22 respiration, aerobic respiration, right? that organic material, the high bod

10:30 oxygen out of the water, So you get those hypoxic areas,

10:34 is what you see here. And so uh so then what does

10:39 do? Well, then that triggers next thing which is if, if

10:43 this material being discharged, you have of nitrate, for example, the

10:51 conditions promote unification, right? So you see is something like this,

10:57 , aerobic respiration, right? Using . So, nitrate goes down,

11:03 ? So we're following this pattern right? We're going as this nitrate

11:10 down, nitrite goes up, We're just following this 123 across the

11:15 here, nitrite goes consumed and then means an increase in N 20,

11:22 ? So, um and that's where prevalence of that greenhouse gas production

11:29 Uh again, triggered, beginning with an anaerobic area due to the high

11:36 influx, right? Causing that metabolism operate, OK. Taking oxygen out

11:42 the water, then that can promote lot of deification. If in that

11:47 being discharged is lots of nitrates in which can occur from fertilizer runoff.

11:54 . So uh these metabolisms, of , all all intersect, right?

12:01 Any questions on that. Yeah. right. So then um uh here

12:10 . So last thing really is this , right? So we looked at

12:14 so gentrification as we describe it to point was thought to be the m

12:23 way of deification. It was a way in which nitrogen is lost in

12:28 environment. But it turns out like the last 10 years, data has

12:32 that this reaction is actually the one results in the greatest amount of loss

12:38 nitrogen. OK. It's called anim . So basically ammonia uh is being

12:45 , right? That's a little OK. And then uh nitrate is

12:51 reduced to ni nitrogen gas. uh so that uh which occurs in

12:58 terrestrial environments in um aquatic environments in Genera Plank toys. They're kind of

13:05 really odd looking types of prokaryotes but very prevalent that do this.

13:13 Um They're really like amorphous blobby type rather on a large size for

13:22 But they do have these, this that they carry out. And so

13:26 you think of the vastness of right, that can contribute to a

13:31 of, a lot of nitrogen loss this reaction. OK. Um So

13:38 , so that's kind of uh the of 22. OK. So we

13:45 through all the different uh sides of triangle, uh electron cycle, the

13:51 asymmetry pathways, like I said you know, in terms of,

13:55 talked, I mentioned a few other of pathways but stick to the signs

14:00 the triangle, the imation and that reaction, those are the the main

14:07 . OK. Um OK. So , you don't want that.

14:14 Any questions, I think. All right. So let's flip.

14:19 we're gonna go now into um Three unit 234 and six.

14:29 So especially in four, about right? So what we've been talking

14:35 in metabolism, one directly uh applies growth which we'll get to next

14:42 not this week, but before we're gonna talk about just the basics

14:45 a prokaryote cell, right? Um of the features obviously being a

14:51 there's gonna be lots of things in , right? With the cell

14:55 you're probably most familiar with, you out cells. Um But there's certainly

14:59 gonna be some things that are gonna unique pro cars and we're gonna kind

15:03 explore some of those things. The so, so um the uh

15:13 so the pro cell types are gonna , right, in terms of their

15:18 , in terms of strictly on the part of the cell. OK.

15:23 They can have what are called not , but they have what are called

15:29 that can be um sometimes protein bound . They can be storage molecules of

15:38 types. Uh You may think, , that's an organelle. It's really

15:41 because remember an organelle is really a lipi uh phospholipid bilayer surrounds a structure

15:48 a chloroplast or mitochondria. That's not these are. OK. So,

15:53 they can, and oftentimes these OK, are kind of metabolism

16:01 OK. So they may appear as like uh questions coming up as something

16:07 these like little structures you see in cell. Um uh uh the plasmids

16:15 another feature we'll talk about more and detail on that in the next

16:19 But they're in addition to the right, small, just say the

16:23 of DNA. As shown by this , the pla pla would be something

16:29 this. OK. And um then structure here it's chromosome, right?

16:37 the chromosome is singular chromosome, single chromosome in a pro carrier,

16:45 So it's more an area the area by that, right is the

16:52 It's not an organelle, it's just area occupied by its chromosome. So

16:56 typically shows up like a a grainy blob, right? But it's just

17:03 chromosome circular chromosome kind of just folded some places and some places it's not

17:08 but it's just the area, it's area, don't think of it as

17:11 organelle. OK. And of the things all cells have,

17:15 A membrane ribosomes, sodium molecules, cetera. OK. Um But of

17:24 , the nucleoid is not a two different things, right? So

17:29 don't have, it's probably the signature when you describe what's a pro difference

17:33 between a pro and like they lack nucleus. All right. So,

17:38 nucleoid is not a nucleus. Um And so external structures like pili

17:45 FLL of capsule uh these are things we will want a little bit more

17:50 later. But um these uh the structure is different from a eukaryote uh

17:57 temporary aerosols don't have these sort of like attachment the cell, other cells

18:03 to other structures. Um And uh then the envelope, so there's a

18:12 envelope itself, it's, that's a of terminology and we have a question

18:16 relates to that. So let's um just go to start with a bunch

18:19 questions, you know, we'll kind work around that. OK. The

18:25 of these OK. Which is true a bacterial cell envelope. OK.

18:35 uh ABC or some combination, Which is true. This really goes

18:42 the definition of what's an envelope. . Mhm So we got three questions

19:03 a row that we'll stop and summarize , two questions, stop and summarize

19:17 in a row. OK? Uh of clicking today. All right,

19:24 count down here from four. So the um the, yeah,

19:34 it it is the all those are . OK. So I use the

19:40 uh or the term envelope is used describing it pro cario because they

19:46 So they at the core, they're like all cells, they have a

19:50 cell membrane, right? And but beyond that prokos can have different

19:58 structures beyond that. OK. And that's kind of what this is pointing

20:04 . So, it could have an membrane, it could have a cell

20:07 , it may not have a cell . OK. So when we talk

20:10 the envelope, it's, it's what's on out here. OK. So

20:16 got the, I just call it this right? Here's your cell.

20:20 . Broad shaped cell. There's a membrane then what's what's out here?

20:27 mark, right? So that's what refer to as an envelope.

20:31 What's going on out there? And you wouldn't be wrong in saying

20:36 , the cell membrane is that part the envelope? Yeah. Sure.

20:40 . Um And that could be, may be all it has. So

20:42 are some bacteria that only have that nothing else out there, right?

20:47 don't have a cell wall or anything but then you go to gram negative

20:50 gram positives which we'll talk about in second, then it changes what's out

20:55 . OK? Um And a capsule be out there, right?

21:00 so it varies depending on what, , what the bacterial type is and

21:04 it's got. OK. So that's we just use the generic term

21:08 OK? Because it can have multiple out there depending on the type is

21:14 um so let's look at the wrong , sorry, definitely the wrong

21:22 Let's go this way. There we . OK. So uh what's in

21:26 cell stuff that's in a cell, ? Bacterial cell. So in terms

21:29 quantity molecules, molecules per cell. the most abundant molecule in a bacterial

21:38 ? OK. II I tend to put b prokaryote cell. I always

21:45 to use bacteria. But when I'm bacteria, I mean IKEA as

21:48 OK. So what's the most abundant ? OK. Oops, sorry,

21:56 remind me, open the pool. . There we go. Um And

22:05 hint this uh the answer here is same for really any living organism.

22:12 . So there's your hint. All . So again, molecule in the

22:28 cell, it's the same molecule in cells and in a frog cell and

22:32 cockroach, you know, name your life form. OK. 10

22:48 It is. Yeah, it's water molecules, right? 70%

22:53 more or less, right? All things. OK. So water is

22:56 most abundant. So we look at kind of a snapshot, this is

23:00 coli um the portions of molecules. uh beyond water then what's, what's

23:08 ? OK. So, well, what I call like the informational

23:13 I lump them in one group, DNA S, your RNAs, your

23:17 collectively. It's about 25%. Um that uh lipids uh membrane, of

23:26 , the main contributor there. Um on the order of maybe like 434

23:33 then uh uh your other stuff, ? Um uh um solute molecules of

23:40 kinds, et cetera, the um uh DNA. So DNA remember

23:47 is just one circular chromosome, So that counts as one.

23:53 Um Now if we look at the Glycan, right? So if you

24:01 this right here again, so for coli, uh if you look at

24:08 same number in staff, it's much than 0.8% pepto Glycan. OK.

24:18 something like uh two or 3%. . Much, much more significant.

24:24 what's the difference there, Staph and Coli anybody? So what's pepper look

24:33 in? When do you find that eee colon has an outer membrane?

24:42 it would be found like in between . What's what is that thing?

24:47 , all right. So the sell . So why does staff have so

24:50 more of it? Headline? Is a gram positive or gram negative

24:58 Right. So a gram positive has lot more of this material.

25:02 As we'll see when we go through structure today. So it's a very

25:06 layer of, of pepto glycan, gram negative. Much less of that

25:13 . OK. But they have something that the gram positive doesn't have,

25:17 have an outer membrane in addition to cell wall. OK. Um All

25:24 . OK. So this question So after this, we'll go a

25:27 bit about lipid bi layers. Uh liquid culture of E Coli right is

25:35 at 34 C. OK. You the information temperature to 42 jack up

25:43 T. Yeah. Which picture A B um with the inner membrane of

25:53 coli most closely resemble after responding to temperature change, the temperature goes

26:00 it will adjust, right? It adjust because it has to or else

26:04 won't survive. OK. Um So about when the temperature goes up,

26:11 would it need to change its membrane ? OK. What happens if temperature

26:17 in terms of holding stuff in hint where if it needs to do this

26:21 adjust right? To prevent that from ? OK. So you can see

26:26 in the membranes, right? You want a membrane that has more,

26:33 spaces in between the fossil lipids or want it to close up somewhat at

26:39 temp. Uh Yeah, let me this stupid pole again, it's OK

26:48 collaborate, right? Two heads better one maybe. Yeah. Through shipping

27:00 a higher temp, right? Think what happens if it doesn't respond and

27:05 would it have to do to counteract effect? OK. And again,

27:27 is an effect that's relating to bacteria . Do it all cells do

27:33 OK. Yeah. OK. So who answered uh a answered a so

27:56 did you answer a? Got What? I don't know.

28:09 Correct. Right. So you so think just envision, you know

28:13 you're 42 this is gonna have more occurring, right? Because that's

28:22 I mean, it's still trying to because I'm not really, I haven't

28:25 in here of proteins as well. . So, but uh protein

28:29 you gotta maintain that number 12, ? It gets more fluid, you

28:33 get more, more if it's like , that's gonna leak out and come

28:38 . Right. So, the cell very selective about, well, in

28:43 , mainly due the membrane itself, very selective about what comes in.

28:47 . So you've got proteins and to , make channels for things that are

28:53 for the stuff that's supposed to come and out, right? So it's

28:56 supposed to be a fluid, fluid with stuff just going willy nilly in

28:59 out, in and out, that'd controlled. OK? So the cell

29:04 gonna say, OK, I'm curren high temp, tighten it up,

29:09 ? Because it wants to counteract Basically, it wants to counteract this

29:14 look like that, ok? Because will be less, less leakage

29:20 right? Because you're bringing those, promoting, you're promoting um those fossil

29:27 um the fatty acid, right? two little legs there are fatty acid

29:31 , right? Very hydrophobic. So want to promote those coming together to

29:37 uh um maintain that membrane integrity. so that's why um you see some

29:43 these fats, fossil lipids have a kinks in them right here here.

29:48 creates separation. OK? So you to straighten those that, that's,

29:52 has to do with the saturation You want to make them um more

29:59 , I'm sorry, more saturated. ? Um More, no double

30:03 double bonds are what create the kinks want, you want those out,

30:06 want saturate because now you have um , they stack together and you have

30:12 interactions, keeping them together, which high temp you want, you kind

30:17 want that because the tendency is for to go like heat kinetic energy,

30:22 ? Wants to separate those things. you wanna promote chemical effects that will

30:29 them together, keep those hydrophobic interactions . OK? And so yeah,

30:34 with it's not and it's not all nothing, it doesn't go to completely

30:38 like this. OK? But there's less of the unsaturated types,

30:44 Every cell has kind of its optimum proportion of saturated unsaturated. It's certainly

30:51 change if you go high temp or low temp it on low temp.

30:56 the the membrane can freeze and that cause complete um membrane to lose function

31:03 , right? That's the opposite it freezes comes together. So you

31:07 of want to create more separation, ? So you try to, trying

31:10 be more like b and as it to freezing temperatures, right? For

31:16 same reason to maintain the membrane right? So um so if it

31:24 , if it's not clear, the answer here is a OK. Every

31:31 that make sense? All right. like I said, it's not just

31:36 do this, I mean, think , you know, crops and plant

31:40 and things, you know, uh gonna, they're probably stretched to their

31:43 in the last summer, right. the heat wave going through Texas.

31:48 , uh but they definitely have to that effect. OK. And not

31:52 the membrane when it, when it's , it's not just the membrane,

31:55 also internally in your proteins and stuff that. But right now we're just

31:59 on the membrane. OK. So let's look at just to recap real

32:07 . So I I'm sure you've all through the structure of a fossil lipid

32:11 , right? Fluid mosaic model and that kind of stuff you learned in

32:14 bio. So, um you the main concept here is the selective

32:20 , right? That's due to the lipid bilayer. OK. Restricts what

32:25 come in. OK. So remember your, your very polar water level

32:34 uh especially if they're charged and their uh that restricts their movement through a

32:41 . OK. Um uh And so why you have to have the inclusion

32:45 proteins in the memory. OK? give that membrane functionality if you

32:49 OK. Um And so the saturation relates to the double bonds you see

32:57 . Uh So having it more uh I creates more heroic interactions with its

33:06 , the uh unsaturated, putting double in creates the kink and create separation

33:11 the proportion of those saturated unsaturated varies , you know, depending on the

33:17 and self experiencing. Um you can introduce things like cy organization which prokaryotes

33:23 do, OK? These things that too stabilizes the membrane, particularly

33:31 , in making those chains straight, ? And uh packing them together.

33:37 . Which would happen under more elevated . OK. Uh Our key in

33:42 think of those who talk about thermo and hyper thermo files. They're obviously

33:48 , you know, keeping a membrane these conditions. So they've, they've

33:52 even different molecules. So these di g Glycerol dither molecules are not,

33:58 not these, OK? They do those but they're interspersed with these

34:04 which are very, very long hydrocarbon . OK. So they can actually

34:10 uh polymerize them, like make them long, which will really enhance the

34:17 interactions. And obviously, these things growing at boiling temperature in many,

34:22 some cases. So that's something with structure like that's definitely gonna help keep

34:26 membrane together. OK. Um Let's . Yeah, this is just so

34:34 , and they too can do the thing here, right? So what

34:38 does, whether it's that or that again kind of um you can you

34:44 of have to envision in your So when you put those rings in

34:48 , it's a triangle or a uh cyclops ring. Um it helps flatten

34:53 out 23 dimensional kind it gives them flat structure and linear that helps to

35:00 with the packing of these together, ? That's kind of what the,

35:04 and, and kind of helps some the integrity of it as well,

35:08 it intact. So that's kind of the cy organization does. OK.

35:15 Any questions about that. So se is something that you don't see

35:19 in our, in our membranes and these are adaptations for life at high

35:25 . OK. Um All the, look at this. So talking about

35:32 , of course, one of the things with membranes is transport,

35:37 Of materials. Um sos et And so uh obviously, uh microbes

35:45 the environment are at the mercy of solute concentrations that are around them.

35:53 . And so remembering the basics of molecules uh tend to, to,

36:01 uh diffuse down their gradient, Um but not all the sites are

36:08 lined up for the cell, So it may have to do something

36:12 and can't rely on that feature, ? So what we've got is a

36:19 is a little, little rectangle OK. It's got a 0.1 millimeter

36:24 sodium, a pond that has much . OK. But it's maintaining this

36:35 , right? Even though it's much outside the cell, right? So

36:40 is it doing that? How is maintaining that particular sodium concentration inside?

36:52 . OK. OK. Cat down did they do all right. So

37:17 . OK. So it's all about concentration grade. Let me get

37:21 Oops. So uh it would be . So the, so what's going

37:26 in this? We are, it's in sodium ions, right? So

37:32 basically low here. Hi inside the . OK. So you would think

37:42 be flowing out, right? Because the tendency of molecules is to diffuse

37:47 the gradient, right? But they're doing that. OK. It's maintaining

37:52 internal concentration even though it's less So it can only be doing that

37:56 its active transport, pumping them OK. So um none of the

38:03 , it's not listed here. So if you answered e you are

38:11 . OK. Just facilitate diffusion, diffusion. These are movements of solutes

38:18 a gradient. OK. Facilitate, facilitate, just means you have help

38:23 because not all molecules can get in diffusing across a membrane. You need

38:27 . That's what facilitated is through a , the pinocytosis that's a process in

38:33 cells. Um osmosis that relates to . OK. So it's it's using

38:40 to keep sodium mines, pump them the cell. OK. Um So

38:52 next one. So then it's uh more question I think. And then

38:55 got and break here. All So again, this is about transport

39:00 . OK. So we got the hypotonic thing process, simple diffusion group

39:12 , the common transport mechanism and bacteria the membrane permanent weak acid bases.

39:22 . And then ee is basically a we talked about in 13, a

39:28 of times. OK. Let's count here. OK? All right.

40:38 So I just go from the bottom . Um So kind of uh separate

40:44 into two parts, right? So got the old proton pump, we're

40:48 with that, right? We have process here. OK. So we

40:55 that we let protons go down the gonna release energy, right? So

40:59 the thing about the concentration gradient, ? If it releases energy going

41:04 you have it takes energy to go other way. So, so here

41:09 using a protein gradient to help pump molecules. OK. So the sucrose

41:14 going from low. So hi and a classic gotta put energy and do

41:23 right? Where's the energy coming from the flow of protons going down?

41:27 ? So again, the concept of releasing process with an energy requiring process

41:32 those together, right? So ee sense uh membrane permanent weak acid base

41:39 us on the next slide. But is true. It can cause in

41:44 ph problems. Many of your food work by this mechanism on the food

41:50 . Next time, just like you'll see citrate citric acid or uh

41:55 AD A Peren Benzo acid, those associate inside the cell creating acidity and

42:02 inhibits growth. OK. Uh group . Yes, that's also true.

42:08 . Again, I'll review these on next slide. Uh B simple diffusion

42:13 not involve use of a transport That's true. It facilitated diffusion involves

42:19 use of transport protein. So things gasses, generally water can, can

42:26 without any help. OK. But talking about water, waters, osmosis

42:32 the transport of water. OK. so a a hypotonic cell interior,

42:38 ? So that would be, so these terms, right? Hypotonic hypertonic

42:46 are relative to each other. So was hypotonic on the inside, it's

42:51 on the outside of the cell, ? So with water, I always

42:56 it this way water flows to the solu side. OK. So that

43:04 mean water will move in this water moves out of the cell not

43:09 , right. So water always goes the high salute side. Why?

43:12 basically to hydrate those sos OK. that's why it flows that way.

43:18 . So this is a false statement . OK. So remember the hypo

43:24 always relative to each other, You can always safely assume if it's

43:29 on one side, it's hypertonic on other side. OK. Um Any

43:35 about the hypertonic hypertonic thing, So uh again, just mentioned

43:43 So here are the kind of the basic transport mechanisms I'm sure you're already

43:46 with um facilitated fusion. I remember that are big. They are polar

43:53 loving that um charge especially are not easily travel only very, very slowly

44:00 the memo. So you give them to a transport protein, um osmosis

44:05 of water. The um yes, molecules can, they're small enough even

44:11 they are polar, they're small enough travel through the membrane. But if

44:15 cell is experiencing osmotic stress, then it can enlist the help of

44:23 ports and those are specific water they'll fill up their membrane with

44:28 And that will cause the rapid movement water either in or out.

44:34 So the cell is under stress this can quickly get rid of water using

44:38 aqua ports, right? Uh And general rule is that, um certainly

44:45 , for kots, I'm guessing for life, uh the uh cells tend

44:50 keep their cells hy slightly hypertonic on inside for bacterial cell. That's the

44:56 uh among other ways, among other , a way to keep the cell

45:01 , water comes in, presses up the cell wall. And so it's

45:05 of keeping the whole cell shape and kind of thing. OK. So

45:09 tends to keep themselves slightly hyper OK. Um And then the last

45:15 here is the, the movements, way the movement is occurring in or

45:22 , right? Is depending on if a passive process that doesn't use energy

45:30 the movement will be always high to . OK? Regardless of where the

45:35 and low is at, that's the it's gonna go, if you

45:38 the cell wants the the solute to a particular direction, it may need

45:44 use energy to do that, especially it's going from, obviously, it's

45:48 from low to high concentration, it energy to do that. OK.

45:52 we'll have to uh do active transport those cases. OK. Um And

45:59 these other mechanisms mentioned in the So group translocation uh relies on

46:05 the concept of molecules diffuse independent of other. OK. So where that

46:14 into play is glucose, right? in through a transporter, OK?

46:20 as it comes in, it's right? So glucose and glucose,

46:27 phosphate move independent of each other, ? So what that means is glucose

46:33 keep coming into the cell as long we as it's being converted to glucose

46:39 phosphate. And that's the first step glycolysis, right? Nanos, similarly

46:45 is con man atol, excuse it's converted to meat and phosphate.

46:49 it keeps coming in, right? if you didn't have that right,

46:52 you didn't have this, OK. conversion going on and you're relying solely

46:59 just coming in with glucose. you had 10 molecules of glucose here

47:05 zero here. It keep coming in you got to five and five,

47:12 ? No more movement. But because keep converting that to a different

47:17 right? It keeps coming in, ? Um Very common mechanism of sugar

47:25 and other things and bacteria. ABC is another way as well. This

47:30 uh specific uh as this one is . Uh but it has a specific

47:35 molecule that brings it to the And here you see a um this

47:40 an active transport mechanism bringing it OK. Uh These are also very

47:46 in terms of transport of nutrients and . Um So the main difference between

47:51 and group translocation is the fact that it has a specific molecule that binds

47:55 the substrate and binds to the OK. And energy expenditure to do

48:02 . Um the membrane, permanent weak basis. This is all just about

48:06 weak acids and bases work basically. . So unlike something like HCL,

48:14 , hydrochloric acid, right? This dissociates into H plus and chlorides,

48:23 ? Completely, right. So in test tube, once you plopped eight

48:28 in there, you'd see nothing but ions or chlorides. That's it,

48:33 ? That's complete dissociation, right? acid, OK? A weak acid

48:39 completely dissociate, right? So you always, and that's the,

48:42 the really the the key here, ? So here's a generic um weak

48:49 H A, it partially associates that you are left with a a neutral

48:55 here that can diffuse right, small uh molecule, it can diffuse through

49:05 once it gets inside the cell, the partial dissociation occurs and that's what

49:10 lead to acidity in the cell. a weak base right? Can create

49:15 alkalinity inside the cell. OK. these as I mentioned, these are

49:21 molecules like this are used as preservatives different, different foods and things and

49:26 to inhibit growth, uh prevent Ok. Um because it inhibits growth

49:32 the cells getting affected by this, can't live in the it's inside,

49:37 be acidic or too acidic or too , it won't function, right?

49:41 . Remember by keeping proteins happy, ? Any kind of conditions that affect

49:47 proteins aren't gonna make the cell resulting in either slow or no growth

49:51 depth in some cases. Um The , and you know, and,

49:59 cells can counteract it. You they can use things like, so

50:03 , amino acids have different uh So they have the amino group and

50:08 carboxyl group and so they can, can actually act as buffers. So

50:12 will neutralize the effect of an acid base. And so the amino acids

50:16 the cell often serve the role of , I think it's a ph

50:23 OK. So they can counteract it a degree. Of course, if

50:25 too much and they can be OK. Um Any questions about transport

50:32 general? I think I'm sure everybody gone through this once before. Um

50:38 uh OK. So now we'll focus the cell wall. OK. Um

50:47 , let's phrase it differently. Let's uh bacteria whose envelope uh may be

50:56 as gram negative or gram positive. just do it that way.

51:00 Now, I, I've started including specific groups because these have shown up

51:05 , you know, I'm sure lots you are taking MC A T and

51:08 dental exam and these things and I've these names show up on their ficus

51:13 proac Toia. Those are two classes your gram negatives, gram positives.

51:19 ? Um The and so as a , OK? If you're in the

51:25 , you'll be doing unknown projects starting week. Uh and thereafter. And

51:31 the one of the first things you is gram stain because you can differentiate

51:37 of bacteria. You be, you begin to id identify bacter types based

51:43 the gram stain. OK? not every car, not for every

51:49 carro is the gram stain applicable. ? But for many it is

51:54 And so it's typically a first OK? The gram negative gram positive

52:00 can really kind of weed out, know what you're dealing with.

52:04 Uh This is stain has been around 1900 I think. Um and it's

52:11 used today, you still use it a clinical uh setting, OK?

52:16 has a strep throat or suspected strep , put on blood auger and do

52:21 gram stain. You see gram positive and chains pretty much tells you it's

52:27 streptococcus that cost strep throat, So there's different diagnostically it's still

52:33 OK. Um OK. So I the um next 56 questions. Holy

52:47 . OK. Are all about OK. So let's start here.

52:58 . All right. So we got one and type two cell envelope.

53:04 . Um So I think I'm not doing anything away by saying something is

53:13 positive something is gram negative, And each one has its own,

53:18 some commonality between the two but some are different. OK. Mhm The

53:56 OK. Can happen. Oopsy. did you go? Oops timer.

54:08 are you? All right. Let's down. OK. All right.

54:17 Let's see. Um Hey, that going to be um this is the

54:35 what he is, it is this play saccharine layer. Um Let's look

54:41 the, let's look at these questions we're gonna recap all this. All

54:44 , let's go to the next OK. And again, you

54:47 all these sides are gonna show up canvas with the answer. So don't

54:51 got too much, you know, it down. All right. Next

54:54 . Same picture. What, what's the black strands? OK.

55:38 Cutting out from 54. Wow. . See the strands are OK.

55:52 . Let's take f acid oops right . Uh All right. Next

56:02 Oops open. There we go. . All right. Two bacterial

56:08 So we're looking for what's the lipoprotein ? Lipoprotein, lipoprotein. OK.

56:53 OK. Come down. OK. is H OK. Yeah. Uh

57:14 then this one, OK. Uh one is in acetyl nic acid?

57:26 . Which one? What do you that? OK. OK.

58:10 Cut down from seven. Yeah. Yeah, it's gonna be this one

58:25 . So uh it's in B and D, right? So this next

58:31 is not a quicker question, but kind of just uh going through the

58:36 of a cell wall. So certainly this is the Graham negative OK,

58:47 positive. Um So you can see by side the basic distinguishing features,

58:55 ? What do they have in Well, they both have the cell

58:58 . So when we we refer to , so the inner membrane, so

59:03 you'll hear that term as well. inner membrane is what we use to

59:08 to the gram negative, right? the the cytoplasmic membrane if you will

59:13 border that defines the cell, which all cells have, we call

59:18 the inner membrane in the gram negative it has this additional outer membrane,

59:23 . So in other words, the inner membrane of a gram positive is

59:28 cytoplasmic membrane. The inner membrane of gram negative is is to differentiate it

59:33 the outer membrane it has right, is of course a a is an

59:36 membrane. Um uh of course the is the cell wall. You see

59:42 difference in thickness between gram negative gram uh labeled these all here are the

59:55 acids. You, you got that the question. That's g the strands

59:59 the o antigen, right? That's green. So that's associated with the

60:03 polysac. We'll, we'll go through in a, in a, in

60:06 second here. Um Para pla So because you created this outer

60:11 you have this outer membrane, now have a space in there,

60:14 That's what we call Perlas. So specific to gram negative. OK.

60:19 if I had to specify here, ? Um and GM is might be

60:27 from a gram gram negative um gram . OK. Uh gram positive.

60:38 . Per plastic 3 g negative. . Uh Endotoxin. Net two is

60:44 with a OK. So gram Yeah. Uh ce so that both

60:55 that of course, right? Um bridges both pepper like in both uh

61:07 a gram negative uh both for these right? And lipoprotein is gram

61:18 OK. So uh something's in something is different. OK. Um

61:25 uh so it also that outer membrane . So when you look at,

61:29 know things like effective antibiotics on these , effective different disinfectants and antiseptics every

61:38 the presence of that outer membrane creates in responses to antibiotics, disinfectants and

61:47 septics. OK. Gram negatives are sensitive to things like your kind of

61:54 type of disinfectants. OK? Think are kind of soapy if you will

62:00 that dissolves the outer membrane material Think of things that a fossil would

62:06 in right, ethanol, the ethanol , right, it is effective in

62:11 breaking down the outer membrane. um whereas grandpas may be a little

62:16 more resistant to that. Ok. each has kind of its, you

62:21 , conditions, things that affected Ok. So that's why oftentimes choice

62:27 antibiotic, you know, can be big deal because it may not be

62:31 effective against one of the other. . So kind of big picture that's

62:35 of where this can play a role from a practical standpoint, right?

62:40 And so, you know, it affect the types of molecules that effectively

62:45 into the cell, basically bless So um the outer membrane can have

62:51 have a place of influence in OK. Um All right. So

62:58 the cell wall itself provides structure. you combine that with the hypertonic

63:04 right? Think of a balloon in cardboard box, right? Cardboard box

63:09 a cell wall. The balloon is of the cytoplasm, the membrane holding

63:14 cell contents, right. So water in, presses up against the cell

63:20 that kind of help keep cell shape integrity. Um You know, it

63:25 go too far. But because you that cell wall, you know,

63:29 you're the cell is protected, especially you think of gram positive versus gram

63:33 , right? A gram positive is protected against that because it has a

63:36 thick cell wall. OK. So type you are negative and positive,

63:42 structure is the same of that the pepto glycan, right? The

63:46 think of an analogy here is like your DNA structure and the um sugar

63:53 backbone, right? Um This kind is is similar. So you have

63:57 sugars repeating, right? Um And you have connections between, so the

64:03 it's hydrogen bonds between the nucleotides right . It's, it's covalent bonds between

64:08 pep peptide chains. You cross bridges link the strands together. OK.

64:15 Again, this is showing you the, the, the role of

64:19 hypertonic, how that helps keep so . OK. Um Here,

64:25 we connecting. So here's the, the peptide cross bridges. OK.

64:31 it's not enough. Let me go here. It's not enough to just

64:36 the strands. OK. Um And think of the cell wall as a

64:41 wall like it's very rigid and un it, it, it is

64:47 There is some flexibility there, but don't want the sellers wanted, wanted

64:52 to be too flexible, right? that's what the cross bridges help to

64:55 integrity as well as those um Tyco are that bridge the whole thing as

65:04 . Help with that. Uh When do interfere with these cross bridges,

65:09 does make it too pores, too and the cell membrane underneath starts to

65:15 out. OK. And lice that's effect of many antibiotics is to interfere

65:21 these cross bridges, the ma the of them. OK. So,

65:26 so bottom line is the cell, cell wall material has to be kind

65:29 kept um in intact, right? the cross bridges, uh et

65:34 OK. And so the connections between through this. Uh and these are

65:40 a, a series of amino OK. Um One of these is

65:46 , we don't, you probably haven't this before. Di amino acid.

65:51 ? You don't need to memorize the of this. OK? But

65:55 it's at those particular amino acids where connection is made. OK? You

66:00 it comes here like that and initially a 12345 um amino acid long

66:10 But when it makes the connection, terminal alanine is released. So now

66:15 have uh the crossbridge form, And this, this uh cross bridging

66:22 between the mic acid sugars. You see the mic acid sugar is

66:28 the connections are being made. Now again, as I mentioned,

66:33 are a target for these are these prokaryote specific proc specific process,

66:40 With Procar specific enzymes, right? these are natural targets for antibiotics,

66:47 ? There's a lot of enzymes involved doing this, OK? That the

66:51 has. And so things like penicillin um the these connections of the making

66:57 these bridges. Vancomycin does. So a different way Ok. Um,

67:04 interferes with the cross bridging of Oops, sorry, too far.

67:12 will sit down. Vancomycin sits down here. Ok. And that's how

67:21 doing that, it basically blocks the from making the connection. Penicillin works

67:26 a different way on a different Um, the end result is you

67:30 make the connection. Ok. now, of course, we're antibiotic

67:36 bacteria naturally. And so, uh have evolved uh enzymes that can basically

67:43 penicillin as we call uh beta OK? They also have resistance against

67:49 . So, um if you if Vancomycin acts by sitting there,

67:58 what might happen in ac that's resistance bank of Mycin? It's a natural

68:03 that might occur there. Bye. of having Aine there, you have

68:10 else there, right? Uh They've variants that have a mutation in which

68:16 alanine, the terminal allen has been by lactic acid. OK. And

68:23 those, those um variants will not bank of mice and it's resistant to

68:29 , right? So all, all bacterial type has to do is

68:34 you know, one mutation here, mutation there. That's it and it

68:37 potentially cause it to be resistant. . Of course. What promotes

68:44 right? What promotes the resistance is presence of the antibiotic? OK.

68:51 that the presence of it promotes those have the change and they proliferate,

68:56 ? So, if you limit the to antibiotic um to only those

69:03 you know, are susceptible to right. Then you can not influence

69:09 much resistant types. Ok. That's whole nature of being smart about taking

69:15 and handing them out. Right. of course, the nature nowadays is

69:19 broad spectrum antibiotics which you know, , it may get rid of the

69:24 causing the disease, but it also all the other populations around.

69:29 not necessarily a good thing. In any case. So um

69:36 So right, again, same right? See this, see the

69:39 the side by side comparison, Quite obvious difference between the two.

69:45 And so we look at gram just back one more the um uh tico

69:50 . So specific for gram positive, span the whole width if you will

69:56 ply and they're more of just like . OK? Keep it together.

70:01 gram mega is very small thin OK? Um With the proteins are

70:06 of what hold it in place, ? Um out of membrane. So

70:11 of stuff going on out here. . And even you can look at

70:15 halves. Uh obviously there's a difference between here and here, but also

70:23 that half in this half of the membrane. OK. So the LP

70:31 layer um also has uh toxic OK. So let's just look

70:40 OK. So specifically this lipid a , OK. Um So basically any

70:48 negative infection, right? Could potentially to this effect. OK. And

70:54 we learn about this stuff at the of the course. But um basically

71:00 negatives if you have an infection by of those, uh the danger typically

71:05 when it, if it gets into blood, what we call septicaemic infection

71:09 then it has access to your entire through circulation. Right? And so

71:14 , um when, if, uh your, your own immune system cells

71:18 and in combination with antibiotics kill the , OK. The cells then they

71:25 and then that's when this material is . Ok? And if it's a

71:32 infection gotten into your blood, then , you know, lots of your

71:37 system cells can now respond to that toxin. And that's, that's the

71:44 . Too many cells respond. It an over response by your system and

71:49 body can go into shock and you . Ok? Typically it was a

71:53 negative infection that's localized and hasn't Not a problem. But when it

71:57 , that's the issue. It becomes , a numbers game, lots of

72:02 now available for themselves to respond too a response. You, you will

72:07 this later. But when your immune cells respond, they have a number

72:10 different effects and that's fine if it's local infection because it only happens

72:15 But it's body wide, it's too and you can succumb to shock.

72:21 . Um So again, it potentially gram negative has that feature,

72:27 But of course, the only ones , we our interests are those that

72:31 pathogens. OK? Um The O the O Engine H Engine OK.

72:39 is uh relates to the um antigenic . So, antigens, you respond

72:48 antigens by producing antibodies, right? so the O antigen is one that's

72:54 to induce an immune response. O is specific for this O polysaccharide

73:02 of the, I remember that the we'll talk about later. That's the

73:08 . OK. So both those illicit immune response by your body. A

73:12 time ago, they've actually uh classified use that as a classification particularly for

73:19 E coli and salmonella and other medically gram negatives um to as a way

73:26 quickly identify, right? So that's you often see a number, an

73:31 or an H and a number after . So the 0157, which I've

73:36 the Chipotle E Coli, right? always pop up when Chipotle has an

73:41 with, if we produce or something that tainted, so they can,

73:46 can take a sample and they'll have antibodies to the 0157. And if

73:51 , if it reacts, then they they've got it. So it's a

73:53 to rapidly ID, a lot of uh many of these gram negative types

73:58 can cause human infections. OK. same with the H. So the

74:02 also have a specific H number with . OK. Um So periplasm again

74:11 to gram negative, right? It's space between the OK porosity of a

74:16 cell wall. The cell wall itself pretty porous that can get in.

74:20 not really restrictive that much. Uh membrane is where the restriction comes

74:26 So you have specific proteins and things allow stuff in um the outer

74:32 inner membrane, negative outer membrane is but not as much as the inner

74:39 . The inner membrane is kind of the the real gatekeeper so to

74:44 But the Adam can have some of selectivity but it's it's it's primarily the

74:49 membrane that has the most selectivity. . Um Let's let me just see

74:55 more thing. I let you guys . Um Yeah, we can we

75:00 , is there any questions? We wait, we can finish it up

75:02 time. OK. So um we'll up the sale envelopes and get into

75:07 other structures. OK. Thanks OK. Yeah. Question I sent

75:31 an email.

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