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00:07 Okay, wow. Yeah. Okay , um I just wanna mention one

00:38 only because I got an email right class, um if you're in here

00:48 a clicker or mobile app. Um do check that you were seeing

00:54 points, so because the email was to use my clicker all semester and

00:59 realized I'm not saying you're great on . Okay. So um do

01:05 Alright, if uh that issue is a me issue because I'm just upload

01:11 automatically with a button push from the point site to blackboard, so that's

01:16 issue of registration or something. All , so you can go in person

01:24 see BB building which is actually close here um that they have a

01:28 support person or persons there, so you need to get that fixed

01:34 So it doesn't mean that your points not there is just if you're not

01:41 or or have a subscription, it's going to be uploaded. Um so

01:49 know, again, just check back and make sure you're seeing your points

01:53 ? If not run the Cbb not today, there will be closed

01:57 the time we're done, but tomorrow least. So, uh let's see

02:02 else, um what is the, did you have for lunch today?

02:10 . They didn't have any electrons in . No electrons to supply your how

02:13 alive, you have stuff stored, ? We can use that.

02:23 so um Alright, uh usual So bike board quiz opens tomorrow.

02:32 smart work. Uh we're gonna finish , well we're gonna we're gonna have

02:37 little bit left because I'm just gonna on pace with what the Tuesday thursday

02:42 doing. And we finished at if look at look at the notes,

02:48 metabolism of aromatic compounds, we're not to get to that today, it's

02:52 fairly brief but we'll do that Monday then start with chapter 14 um likely

03:00 it all up next week. So then we'll have when it comes to

03:05 break, Then we come back that the 21st. That's one of those

03:12 days. And so anything left over You know, the part two will

03:17 up so it likely won't be a class, I'm I'm assuming. And

03:22 then the exam is later that Okay, so you've got a pretty

03:27 , you know, chunk of time between the end of next week and

03:32 an exam is to, you study and you know, you have

03:36 questions about unit two? Certainly uh me know. So we're only covering

03:42 of the three chapters this time. So anyway uh the so let's go

03:50 uh I just kind of put together of the things we talked about last

03:55 . Okay, so so kind of and so we're looking at the beginnings

04:01 so 13 and 14 And really the part of unit three Okay covers

04:09 Okay, so how you know specifically terms of how life obviously we're focused

04:17 precarious, but of course it's applicable all living things how um food was

04:24 in how energy is is uh it available to produce from that we can

04:33 so we of course are aerobic aspire okay. That's what us mammals

04:40 Um we can do some fermentation in muscles. Okay. Um but uh

04:47 course precarious have very diverse range of . So we're focusing 1st and 13

04:54 on metabolism as it relates to um crops, right? Like us alright

05:00 complex organic molecules, breaking them down getting energy from them. Okay.

05:08 um and so the term delta, talked about delta G last time,

05:13 of that as kind of the the that can be used to do stuff

05:16 do work um whether it's carrying out reactions moving a flagellum uh maintaining a

05:26 , right? These are all forms energy. Okay? And so um

05:33 terms positive and negative DELTA G. ? So this concept of combining a

05:41 releasing process negative delta G. To energy requiring process positive delta.

05:50 happens all the time. It's how how things can can happen. That's

05:55 reaction can go that wouldn't go Okay. And so um the the

06:03 and so we kind of focused on you know, a lot of stuff

06:06 threw at you last time. What see in the slide here diagram at

06:10 bottom there. Um We're gonna go those things in a little bit more

06:15 but explain a little more explanation on of the parts. So this part

06:20 talk about proton motive force right? later on next week or next week

06:29 a little bit about electron transport So we look at look at the

06:31 parts individually in a little more but overall I just get an overall

06:37 of how this thing fits together. , so again, we're looking at

06:43 is reparation. Okay, it's a of energy production is through oxidative phosphor

06:51 . Okay, so these two things tied to each other go hand in

06:56 , respiration. Oxidative fermentation just like fermentation wouldn't would not be go hand

07:04 hand with that. Okay, fermentation energy in a different way.

07:09 Or in a in a in a http producing way. Let's put it

07:17 way. Okay, we'll talk about and a little bit and so uh

07:23 with with this process it's sustaining, a proton gradient. Okay, because

07:30 that is a negative delta G. , as it goes down its

07:37 Right? Making a tps is a delta G. Okay to make them

07:44 the ADP that takes energy. And protons going down, we can couple

07:48 together. Okay, proton gradient. going down https or http. That

07:57 release is used to produce a Tps in itself requires energy. So we're

08:01 these two things together. Um the pumping of protons out is actually a

08:11 delta G process that it's an active active transport. We're pushing protons from

08:19 to high concentration. Okay. That energy. And so the energy comes

08:23 electron transfers which is a negative delta . So again, coupling these two

08:28 , right, transfer of electrons um energy. And that could be used

08:34 and that is used to pump protons . So uh remember that The thing

08:40 keep sustaining this has a couple of . Right? It's all about

08:45 Okay. Um and maintain that We have to have a source of

08:52 . Okay. So remember the It's not So think about it.

08:57 keep it simple banana. Right? banana can be an electron source.

09:00 right. But the banana is not to come down and fiddle with the

09:05 transport chain and give electrons to it first to break down that banana right

09:11 to individual molecules that then go to . And then it's those, you

09:16 , banana has lots of carbs. assume, different types of sugars and

09:21 . Those are the molecules that will broken down Okay. Oxidized.

09:27 And then in the process of doing will generate these. So these are

09:32 actual molecules interacting with electron transport chain they're not the source. Right?

09:38 source is this? It's our Okay. But it's the the the

09:44 carriers that are formed as a result this source being oxidized. They're the

09:48 that actually interact with the components Okay. And so um so it's

09:54 uh reduced compound becomes oxidized oxidized compound reduced. And so you see here

10:03 source initially reduced becomes oxidized, N D becomes reduced as it picks up

10:09 electrons and then becomes an nth becomes as it gives up those electronic electronic

10:15 chain. So these all alternative, know you never have in reduction without

10:18 oxidation and vice versa. Okay. her hand in hand. And so

10:24 then again the flow. Right so have a source of electrons feeding this

10:29 electron carriers. Then we have an right? That will that's this is

10:37 be the the accept reform. Is one the oxidized form? Okay,

10:42 up electrons. So think of a form a molecule as being electron rich

10:48 of electrons. Right. Oxidized form electron poor. Right so it's capable

10:54 receiving electrons. Okay so you're more forms are what will what will be

10:59 except er and so you're gonna put molecule at the end there. That's

11:02 super duper electron grab it. Um An auction is one of those

11:08 anaerobic respiration nitrate is one of Okay so it helps. That's what

11:12 the flow going. So you have on this side components on this side

11:18 here. Okay. On the That are more better at giving up

11:24 as we progress to the right More and more. They're better except

11:31 better grabbers of electronic welcome. And so that those features maintained float

11:38 enables to float occur and sustained approach Grady which sustains an ADP production.

11:45 ? So you're you're forming and your formula https and hide rising a DPS

11:52 of times. Okay, while you're there and so of course you need

11:57 keep supplying that right through the food eat or you stored right, mobilize

12:02 too metabolized, oxidize it and keep going. Okay. So um so

12:10 then identification of certain metabolic types We can look over here at the

12:17 organic inorganic, that's your head. trophy wife. Um little trophy

12:24 Okay, um a little trophy. if it's using an inorganic source,

12:31 will still have these these same components . It'll have electron transport chain proton

12:38 and etcetera etcetera. Okay, It's the the energy sources of inorganic versus

12:43 . Okay, um and then on side of course is looking at the

12:50 er internal accepted tells you every Okay, now everything you see

12:58 uh none, none of which, of what you see there applies to

13:05 . Okay, um the uh there electron source for fermentation of course.

13:15 . And it doesn't involve N A N A D. H. But

13:20 doesn't involve a terminal accepted. It involve electrons. None of this

13:25 80%. Okay, completely different Okay, so, um, so

13:35 , we're gonna go through this and it's kind of starting to sink

13:38 But if not, we're gonna keep happiness in different ways. Uh,

13:43 rest today and next week. um, but at this point,

13:48 any questions. Okay. Yeah, don't know what it's called. All

13:59 , mm hmm. Yeah, you get that one too. Hmm,

14:04 , yep. And I kind of go to that view when we get

14:10 14. They're actually next on On monday. Well, I kind

14:14 president that part of it. But right. Yeah. Um Okay.

14:20 , again, it's gonna seem like very basic question. But judging by

14:24 response yesterday. Not to this but the next one that follows.

14:29 . It needs it needs to be needs to be put out there.

14:32 . So can diabolic process is just cellular respiration, release him.

14:38 Based on the information below, there's boxes you can assume the energy released

14:44 metabolism could be used for the purpose forming a Tps. So, is

14:51 a a accurate assumption or false And I understand this could be very

15:05 , but it is to make a . Mm hmm. Mhm. Good

15:46 . Will. Right. You can the energy released from metabolism could be

15:51 for the purpose of forming a Right, Okay, lets go

16:05 Okay. Alright, so let's look the next question and we'll come back

16:12 that. Okay, so here's the one and put in a couple of

16:21 that may help. So here a delta G. Metabolic process. Annapolis

16:31 is one that could be linked to teepee formation and your faults. Thank

16:53 . So, could be linked linked coupled to Okay, in conjunction with

17:08 , so it's not saying a positive is one that is a teepee

17:14 saying could be linked to that process be coupled to it. Okay.

17:24 . Mhm. Better than yesterday. was like almost 50 50.

17:29 so um Oh, I don't want . Alright, so um back to

17:36 first one. So certainly um having talked about it and showing the diagram

17:42 to this, that um that's you know, when you eat,

17:47 know, you're breaking down that food those molecules um that process releases

17:56 Right? And you use that to sustain that proton gradient to that then

18:02 you a bunch of bunches of Okay. So of course that's a

18:06 a true assumption. Okay, that a correct assumption. Um Now,

18:14 let's circle that the um the next . Positive delta G process.

18:23 so metabolism. Okay, let's start way. So uh so as it's

18:31 up here, it's just telling you that's what positive or negative DELTA

18:36 Right. It's negative delta G. , so, alright, so what

18:45 a teepee formation negative or positive DELTA . Right, okay. So again

18:52 these two things together. Okay, in this question All right, A

19:01 metabolic positive delta G metabolic processes. that could be linked to a teepee

19:05 . You just said a teepee formation what lt G. Okay. Does

19:15 make since then the with the metabolism to link that to that?

19:25 Why would you think of an anabolic ? You wouldn't want to link a

19:30 formation to that? It wouldn't just making it more positive delta G.

19:36 , so the energy release from this http hydraulics sis is what you would

19:47 to perhaps make them make the positive the process go okay. We had

19:53 question. No, not question. was uh we looked at the

19:57 you know, the ad activity activity of of reactions. Right? The

20:02 G. of one add to the G. Of another. If the

20:06 result is a negative delta G. then it's theoretically a process can

20:10 okay, so as written here, false. Yeah, a positive delta

20:19 . Process is one that would be to a teepee hydraulics. Sis.

20:24 . one makes the other go, . Um so let's look at more

20:31 at this diagram here. Okay, um Examples of catastrophes um and algorithms

20:42 starting on the left side 1st. where you're going to use as our

20:49 something? We'll see over and over . Okay. Not that.

20:53 Uh So psychologist and cell respiration. So complete breakdown of glucose test

20:59 02 and water. Um The obviously breaking down larger, more complex organic

21:07 to simpler and products co two and . Okay. That will release

21:14 Jack. Now the role of a . Right. So we have anabolic

21:21 . Alright. Can be making Making making D. N.

21:26 Right DNA replication is an anabolic process you're building something. Taking smaller units

21:32 putting it into to make a bigger . Okay so that's a process that

21:38 require energy input. Okay so the between these two metabolism metabolism it's often

21:47 exclusively but often is a teepee. . And whether it's an embolism Orca

21:53 ism he believes is always a part well but a teepee. Right?

22:00 ADP and phosphate to form a TPS energy. Okay. Energy can come

22:07 the release you get from metabolism. And there we go. Okay this

22:14 what we saw in the diagram. . We had um proton maintaining a

22:19 gradient protons go down their gradient release that's coupled to make a teepee.

22:26 ? Um then these can be used do to help out anabolic processes and

22:33 them go because they require energy. so ADP hydraulics releases energy that can

22:42 that process go okay so that's how T. P. Is kind of

22:48 something called the energy currency if you kind of a corny term but but

22:53 cycles between you know hide realizing at . And forming at PS. One

22:58 takes energy to do it. Um formation their hydraulic sis releases energy.

23:05 again you're forming and reforming ATP's um of times a second while you're sitting

23:12 . Right? Especially your brain Brain tissue is the most energy using

23:17 in your body. Okay constantly going A. T. P.

23:20 Okay. Um Any questions? Yeah they calculated it. There is

23:30 static I sure they have but I know for sure. I mean what

23:39 used in in in And Selves measuring p. is ADP ADP ratios.

23:47 so typically a healthy healthy functioning cell like a 1.5 ratio of 80

23:54 t. a. d. And so when that kind of changes

23:58 can sense that to kind of ramp metabolic processes and stuff like that.

24:02 don't have to answer your question. that's that's kind of my knowledge of

24:07 . But so your question specifically. not sure. But I wouldn't be

24:12 . Yeah. Question the last questions was talking about. Let's see this

24:24 . Okay I guess the question was so asking like what would.

24:38 Right. That's exactly what I Well the question was up there.

24:41 kept saying coupled to link to. exactly. And I said it doesn't

24:47 it's it is it's linked to. yeah, couple linked to couple to

24:55 insert your favorite. Okay. So you're saying is it's not that

25:01 but it's something related. Yeah. one that could be linked to,

25:07 ? When you're doing one here and there, you're coupling them. You're

25:11 them. You're I don't know how to say it. If somebody else

25:14 say it better. Let me Please. Please that. How is

25:23 not linked to? Or a couple ? Um yeah, I I guess

25:34 don't know how you can interpret linked make the leap. That's saying it

25:39 a teepee formation that I can't I see that. All right.

25:48 Yeah. So, let's read this a million times before you go to

25:51 tonight, linked to coupled to I'll think of some other ones.

25:59 , um All right. Is there other questions? Yeah, mm

26:04 Um okay. So, okay, , let's go to this question.

26:11 is so since uh, you we're doing nothing but redox reactions pretty

26:18 in respiration. Uh, fermentation, . Uh let's make sure we understand

26:29 . Okay, so, which is regarding this redox reaction. Okay.

26:34 common one. Um and this is a fermentation process. This is what

26:44 on in your muscles. Right. they're fatigued using lactic acid. Um

26:52 in biological reactions, it's although in electron transport chain components are of course

27:00 naked electrons if you will And reactions this, it's very often that it's

27:06 . Alright, so hydrogen is equal course to one proton. When electrons

27:10 transferring hydrogen, you're transferring electrons as . Mhm. So that that question

27:36 linked to a couple too. I I'm gonna do is that there's a

27:40 like that on the exam. I'm put it in parentheses, you

27:45 couple to link to write in So you don't misinterpret because it's a

27:51 a the pain in the butt when know what the you know the

27:55 But then that trips you up. , so yeah, exactly.

28:13 Okay. Alright. So if you to be you are correct.

28:22 Yes. Okay. Um Alright, a couple of things you can

28:29 The the transfer of electrons. You the molecule box here and then lactate

28:36 here. We've added electrons there. definition uh Michael accepts electrons becomes

28:46 Right? So pirates becoming reduced in process uh and A D.

28:52 Up here. Okay, electrons are their electrons here being transferred to power

29:03 and then we have an A. . H. Okay, so any

29:07 oxidized private reduced. So a couple things um like for example, D

29:12 it says D lactate is oxidized. , so both lactate in this reaction

29:18 N A. D. Are simply end products of the reaction there.

29:24 oxides are reduced. And so they're the end products of this reduction

29:29 The reduction of pirate bait and products this through the occupation of N.

29:34 . D. H. D. products in A. B.

29:37 It so you don't so don't say in this. Okay for example um

29:46 I just want to make that point some people think that. Okay but

29:51 not the case. Okay so um okay so let's look at a little

30:01 about energy capture so again electrons or represent energy of course and capture

30:09 That is a potential energy. We do something with it when we saw

30:14 know that that can be used to gradient and then get energy from

30:19 So in the reaction we'll see time again it's glucose plus oxygen to give

30:25 two and water. There's a lot energy. Okay uh just remember that

30:30 course glucose is always the example for things. But you can insert thousands

30:35 different sugars, uh lipids, what you into that slot. All of

30:41 geometry will change. It will still to see. Okay and lots of

30:48 . So in terms of oxidation So you can see of course the

30:54 here representatives H. Right are no in C. 02. Obviously they've

31:03 two oxygen. So you see the of water often reduced to water.

31:11 um now the uh chemically right looking the chemical formula chemical structure. So

31:23 glucose molecule here has related energy by it energy is in these bonds.

31:31 , so if we take off some these electrons, okay we will then

31:38 that a series of steps. So black colossus it's a pyre of eight

31:44 one of those molecules that's you one of the fork in the

31:48 If you will. Okay get the bait then you can go a couple

31:52 different routes to fermentation or respiration. that that part of black colossus is

31:58 uh is actually what sustains um it's fermentation actually realize on this part.

32:08 , it's it's a way of making , right? It doesn't have the

32:11 of it. The um so certainly carriers are important and the main ones

32:16 in A. D. For the part but F. A.

32:19 H. To some degree. Um of course the in this represents metabolism

32:28 as we go to C. so C. 02 is very

32:31 Okay, you cannot break down 02 to further products. Okay.

32:38 you can only use it as a block. Okay. And that's what

32:42 autotrophs would do is take that and it up into larger, more complex

32:49 molecules it needs. Right? So an apple is um Okay so that's

32:54 uphill climb which of course means lots energy and you can see you

32:59 all the bonds that have to form do that, you can take a

33:04 amount of energy to do that. , so if you look at glucose

33:08 , glucose compared to SEO too, know, all those, all

33:14 It's not showing like the bond angles things. Remember that. You

33:17 you have electron clouds around these atoms creating repulsion negative charges that create different

33:24 bond angles. But it does represent an unstable molecule full of potential

33:30 Right, glucose does. Um And that is what we capture when we

33:36 it, producing these electron carriers that then get energy from. Okay,

33:41 SEO to write very stable. And two it takes a lot of

33:49 to put into that process to to it up into a larger model.

33:54 . Um so it may seem on that, you know the glucose to

33:59 to that that co two fixation is the reverse of of black costs.

34:06 so respiration. It's it's not it's completely different components involved, et

34:11 Uh and certainly in terms of Okay, so um let's see.

34:19 , so a couple of things. so electron carrier is obviously important in

34:24 process of oxidation. Um and reduction and so just one point here on

34:31 A D. Agh when it is electrons, it's always drawn and kind

34:39 written in that kind of a formula you have the end product being in

34:43 D. H plus H. And so the reason for that is

34:48 portion that is involved in the in electron um acceptance appear in the box

34:57 this kind of chemistry where um So hydrogen is equated to electrons and

35:04 But the ring connect in the ring the in the market can accommodate both

35:10 . Okay so both electrons will be here and so there's a property called

35:16 residents. Okay that the electrons can around in that ring but it can

35:22 accommodate one of the hydrogen. there's two. Right. Only one

35:28 those is able to fit in there then the remaining one is out here

35:35 it doesn't become part of the molecule instead it's just a proton. Okay

35:39 hence the term in A. H. Plus H. Okay.

35:44 but again in A. D. universal. Universal among all living things

35:48 it's universal electron carrier. Like T. P. S. A

35:52 kind of energy molecule as well. But of course participates in lots of

35:59 redox reactions. Okay, now, generating 80 P. So three basic

36:07 you mentioned. He's already kind of Um the part of the most Basic

36:13 is a substrate level phosphor relation. . Um you simply it occurs in

36:21 couple of steps in the process. look at it like causes and

36:26 Um but you have a phosphor related and it's simply just hands off the

36:31 to ADP to make a teepee and it. Nothing more complicated than

36:36 Okay. It is how a fermenting produces energy. Okay. Is through

36:43 through this mechanism. Okay. Um other two weeks we mentioned oxidative foster

36:51 . Right? That diagram we saw . Um the involving you know obviously

36:57 comparison is a substrate level false Much more complex. Okay, involving

37:03 uh membrane involving proton gradient involving a and etcetera electron transport chain all these

37:11 . Okay. But you do get much larger quantity of HTTPS compared to

37:18 we see in fermentation using substrate level relation. Okay. And so um

37:25 fox relation has has these same Okay. Except it's light. That's

37:33 driving force. Okay. It has produces a proton grading. It has

37:39 transport chain, it has an T. P. S. It's

37:42 that light is what's the driving Okay. So for the false correlation

37:47 oxidative false correlation, mechanistic lee and components are the same. Okay.

37:56 now we'll see when we compare different forms of respiration and fermentation which

38:05 they compare energetically in terms of amount produced. Okay. That we'll see

38:11 . Okay, so here's a table shows different carbon sources left. Okay

38:20 and those carbon sources being oxidized with um terminal acceptance. Okay, oxygen

38:29 nitrate or via fermentation in one Okay. So of course what we're

38:36 here is looking at different carbon sources our flask are medium and we're gonna

38:40 gonna lead to production themselves over. , and remember the term biomass agency

38:46 biomass up here. This is simply of living material that's present in that

38:51 that growth medium. Okay. Of , represented by cells that have

38:55 Okay, so um so the I this kind of basic diagram a lot

39:03 to kind of show the respiration Right? So this would be a

39:09 here electron transport chain. We have source and an acceptance. So,

39:12 terms of the table, Alright, here is the source of electrons carbon

39:18 electron source and then the oxidant. an oxidant gets reduced. Right?

39:23 these will become reduced oxygen, water to nitrite. Okay, um and

39:30 of course blue represents aerobic respiration, anaerobic respiration and green fermentation.

39:38 so fermentation has certainly a electron source in this case, but just know

39:45 accepted. And that's why it's Okay, uh and of course it's

39:50 that reason anaerobic. Okay, so so we look at uh ethanol because

39:58 is represented in each type. So here and here and here.

40:09 , so we have a representative for respiration, anaerobic respiration and fermentation using

40:15 as a source. Okay, so one thing that is glaring speaks right

40:20 you is the energy output of right? Compared to respiration whether anaerobic

40:29 is the body. Okay, because that energy production equates directly to

40:36 how much how much biomass you'll Okay so with uh so you see

40:41 biomass yield of 3.5 g per mole ethanol compared to in the mid twenties

40:48 respiration. It's just simply a fact how much https you get with each

40:53 . Right? And so that equates to more growth or less protect.

40:59 So then the other thing to see that aerobic and anaerobic respiration can be

41:08 similar. Okay, um aerial respiration wins. Okay but it doesn't always

41:17 win by a big margin over anaerobic . So anaerobic respiration, it depends

41:22 the travel except er nitrates probably among best in terms of alternative to

41:29 Okay, but that can vary um uh you know, respiration in general

41:36 just good. Alright. Certainly more than fermentation in terms of energy

41:40 And the other thing is um if look now just at um within the

41:48 process, so aerobic respiration, you get ethanol versus glucose. Okay,

41:54 you see a almost threefold increase in over ethanol. Okay, so why

42:03 that be? I don't think this better than ethanol. Is there a

42:10 between because ethanol molecules my energy actually glucose molecule prepared to Vietnam right,

42:20 . C. Two H 402, C six H 12 0 two.

42:30 So you can put uh fat liquid even more. They theoretically could give

42:35 more more yield. But um but also issues with lipids dissolving in um

42:44 medium but we don't get into That's when you talk about that.

42:47 um but like a non paper exercise comparing carbon sources and size that there's

42:55 more energy in a bigger carbohydrate molecule example. Okay so um anyway the

43:04 I think what we have here. . Any questions? Alright so let's

43:12 over to part two which is basically cover getting kind of into the process

43:18 what causes so aspirations. So I to say that thank you Because I

43:25 to ask what do we know about causes and cell respiration. Right.

43:29 said you don't know that 60 plus are involved. Okay. It's more

43:34 stages. Right? As you see . Okay so certainly you should be

43:38 with these terms right? Somebody's our . Some of them are really just

43:41 of molecules. Okay. But you're to see them in the process of

43:45 we go through this. So first like colossus, what goes in what

43:50 out. Okay so you may find helpful also to kind of keep track

43:55 carbons. Right so six carbon glucose three carbon pyre of eight and actually

44:01 of those. Okay two of these then we get some energy um energy

44:10 a T. P. A. . H. And then um pirate

44:15 again. Is that fork in the ? Right so we go to fermentation

44:19 respiration. It all depends. There's some bacteria are strictly only for

44:25 . Some are much more versatile. coli can can ferment it can re

44:30 aerobically occurrence prior and aerobically. So can do all three. It all

44:35 on what is the environment they're Is aerobic anaerobic. Is it?

44:40 they have the right molecules to serve a terminal except er and so

44:45 Okay. Um And they can switch conditions change. They can switch from

44:50 to the other. Okay so um in fermentation, okay that remember gives

44:58 um we call it an incomplete We don't go to C. 02

45:02 water we go to Molecules that still some energy left in them. So

45:06 small organic acids, alcohol, C. Four. Specifically the max

45:12 . So formic acid uh acetic acid . Nick acid, butyric acid,

45:19 kind of As big as they get . four. Um And you do

45:24 energy not as much but you do some 80 P. Para.

45:29 Does he look away? So she away two of these. OK uh

45:34 there's a two carbon molecule. So gonna lose some of the C.

45:40 in this stage here. Okay and and then the process from an Nth

45:47 silica way funnels into the Krebs Okay. Where we'll finally complete the

45:54 of glucose. We lose all the co two and then produce of course

45:59 energy. Okay. And then all these electron carriers here here and

46:10 We'll follow themselves down to the electron chain. Okay. That's when that's

46:16 sustains the proton gradient and the whole production. Okay, So again,

46:23 knowing these stages what goes in what out. Okay. And you

46:28 I have an idea of and that energy that's being produced. Okay,

46:33 hmm. Um All right. So start with glycol ISIS. Okay.

46:42 the pathway that we have all living have bacteria habit, but not all

46:51 are. Some have some different but the MBI is a historic ancient

46:56 . Um And so one of the is that it can be a sticking

47:06 because we've been saying, okay, calls this respiration is all metabolism its

47:11 release. Right? So, I use this analogy or example of

47:20 we are on top of the Okay. And here's our rock.

47:25 it can be glucose if you want to be. Okay. So remember

47:30 potential energy. Look at that as energy a molecule has as a result

47:36 its position or state. Okay. so up the top of the hill

47:42 to here. Right, There's more energy on the top of the hill

47:47 there's more capacity for it that caused . Right? You can roll

47:52 Right? I can be standing here go get splattered by the oncoming

47:57 Right. That's certainly creating causing Right? Compared to if it's down

48:01 bomb the Hillary. Okay, but even with that, so this

48:06 can be will be a negative delta right here. That that still needs

48:16 roll downhill. Okay, So you have to put in a little bit

48:20 energy. Okay, So I have go up here and wedge a two

48:24 four and here to get the ball . Okay, But once I do

48:28 get a surplus back. Right. I got a net energy formation even

48:34 I have to put in a little the same thing that happens in

48:38 Right, So the glucose is the investment. Okay, so we do

48:42 to put in a little bit of . Okay, And that has to

48:46 with kind of the inherent energy and glucose molecule uh to make a little

48:52 reactive, we have to basically pump up a little bit of energy,

48:57 to speak. Right, so that's a teepee comes in to do that

49:01 phosphate groups to it. Right to in the process. Right here and

49:07 . Okay, so um so as as it goes through and don't remember

49:14 memorize these these names. Ok, no glucose and no pirate bait.

49:19 , But um so we go through energy investment phase down to producing actually

49:27 of these glycerol 93 phosphates that then the start of the energy harvest

49:33 Okay, Because they're going to capture here. A net increase.

49:40 So a net of uh two https uh two and a th Okay,

49:49 couple of things about the pathway. one here here you're forming a

49:58 that's the substrate level of phosphor Okay, So you have a phosphor

50:03 is the donor? Okay. Um anaerobic. So um it doesn't uh

50:12 though oxygen may be present, of . Right. It doesn't use that

50:16 need that to be there for the . That does not have a requirement

50:20 oxygen. Okay, um the a , of course, that's all it

50:27 is glycol is is to to produce . Okay? Um so again,

50:35 little bit of energy investment in the , then we can get the ball

50:38 , so to speak, get a of energy back. Okay? And

50:43 occurs again. So you see, , you can kind of so at

50:48 bottom. Right? So now we're here. Right, so here's a

50:53 using the same analogy. Right, we got the ball rolling, negative

50:57 G. Okay. And we made teepee. But now look where we're

51:06 . Right, So here's para mate the bottom of the hill.

51:12 so now we actually have to pump beta. All right, you have

51:16 energize pirating and that's what the next is about as we'll see.

51:21 not yet because we're gonna go into but before we go into fermentation um

51:27 look at some a couple of alternative to the E. M.

51:31 So there there's what we just saw M. B. Pathway energy

51:37 The other two don't give quite as energy yield. But um one of

51:42 pathways called the E. D. . Number one. Most bacteria that

51:52 the E. D. Pathway and . We'll also have this okay this

51:59 typically their primary pathway that they use . M. B. Pathway but

52:05 can in certain times use that one well. Okay so the easy pathway

52:11 about metabolizing the sugar acids. Okay all they are is they have a

52:17 things like glucose for example have an hide group at the end. Right

52:23 the ch, oh okay. Make calvados sugar we call it okay group

52:31 the end. Makes it a sugar . Okay and those are processed a

52:35 bit differently. You can see sugar here are going to this intermediate gluconate

52:41 so forth. Um So what's the deal about that? Well that sugar

52:48 are plentiful in the mucosal secretions of intestine. Okay so actually the bacteria

52:56 have this pathway or things like Coli and other gut bacteria. Okay

53:02 so it enables them to use that sugar acids in in the gut as

53:08 carbon source where others may not be to do this unless they have the

53:12 . D. Pathway. Okay so provides an alternate way to to get

53:17 basically to get energy from a different but like I said of course those

53:23 have E. D. Typically also the BMP pathway as well. Okay

53:29 the third one is more for the of bio synthesis. So the pintos

53:33 shunt which we have as well is for bio synthetic purposes. Although in

53:40 of stress um where it needs to can get some energy from it But

53:46 primarily for making these different size You see 763 for carbon long that

53:54 were then used as building blocks to things like nucleotides um amino acids and

54:00 forth. Okay that's primarily what its is for. Okay. Um Okay

54:08 any questions? Okay. Alright so look at fermentation. Okay here's

54:19 And as you see by comparison it's much more complicated. Right So we've

54:25 through uh overview fashion this process. The like causes is what starts

54:37 Okay and then the fork in the . Right? So if we have

54:41 terminal except er so if oxygen is or other terminal except er and the

54:48 is capable of doing this then it go respiration of course much more energy

54:54 . Okay so involving you know, down into some kool aid and Krebs

54:59 and so forth. Okay but if a if it doesn't have a terminal

55:04 er and it can ferment well then is the wrapped, right? No

55:09 and wiggle fermentation. And so the a couple of things remember. So

55:17 look at fermentation. Remember what you . Right? You have black colossus

55:22 course. And what does glycol Asus like Alexis needs sugar. Okay.

55:28 needs I haven't drawing out the reactions ADP but ADP plus phosphate gives you

55:37 teepee. Right, so you need . All right. And you need

55:41 . A. D. Right? you need to be just simple summarize

55:46 here, glucose. Okay. Oh hmm. Okay. So the glucose

55:59 other sugar. Okay. N. . D. And ADP and

56:05 Okay. So assuming bacterium has the hole's pathway. And the enzymes you

56:12 these three things. Right? Glucose . D. A. ADP and

56:17 is not gonna be an issue. it's gonna have that, right?

56:21 as long as you're supplying some sort sugar using the example here, it

56:25 be lactose, sucrose, hundreds of things again, depending on the bacterial

56:31 and what it can do so, then you need to keep the supply

56:35 N. A. D. Going . Because remember if it's fermenting,

56:40 , these these any dhs will be , right? Normally they go to

56:48 transport chain. Right. Well if not respond firing then they're not being

56:53 in that way and they'll just build and if they build up and they're

56:56 being used then that those are the redox balance out of balance.

57:01 And so this will actually stop all . So you gotta keep regenerating and

57:06 D. H. Two N D. Right? Because again,

57:11 one of the three components to keep going right? Sugar, N A

57:15 . And a. Right. So keep that up then you'll produce a

57:20 . Right? So, I'm not that's what fermentation is about.

57:25 And so um so things like lactic fermentation, ethanol fermentation purposes. So

57:32 the these are reactions that occur to of eight for the purpose of regenerating

57:38 maybe. Okay. So uh but not a lot. Right. Compared

57:44 respiration, you don't get the same level of energy. Okay. So

57:52 I mean, you can see their of two https for each mole of

57:57 . Right? With respiration is like https way bigger difference. Okay,

58:04 let's look at a couple of Okay, so this is lactic acid

58:11 . Um and so you see, , here is the components we

58:17 Right, glucose ADP and phosphate and . A. D. Okay,

58:23 we've got to keep those supplied. so when we do the fermentation.

58:28 here's a cookie cookie question. so looking at the components. So

58:34 have three choices, Right? You a mm hmm. B see.

58:44 . So which one is oxidized Which one is being oxidized in this

58:50 ? Mhm. Mhm. Okay, again, what's being oxidized in this

59:22 ? Para bait. Agh or Okay. Yeah. So if you

59:39 this basically, this is a different of asking the same question we had

59:43 . Right. So, um so can follow the electrons here and

59:55 So parents being reduced in A. . H. Is being oxidized.

60:00 . D. H. D. . E. D. Okay,

60:03 um and so as long as those that reduction of pirate keeps occurring,

60:09 forming A D. That can go top to black colleges and keep the

60:12 rolling. Okay, so the next , I have A B.

60:15 But I'm not. It's not gonna a clicker questions. Just give me

60:18 shout out on this one. So alcohol fermentation pirate bait again. This

60:25 we're gonna discard box late to go to acid formaldehyde, which is a

60:31 carbon molecule and then A. H. From good colleges. So

60:36 , it's coming. What's it's what's here? Right. And uh we

60:41 methanol. Okay, so which What's reduced in this in this

60:47 This mhm. I remember something is reduced something green oxide at the same

60:59 . Okay. And right, he's reduced to ethanol and a B.

61:06 . Being oxidized. Okay, so B that's um being reduced.

61:16 so you can see here and Right, electrons being added to

61:22 Okay, so, um, so , the point of fermentation are um

61:29 regenerating the N. A. Right, That's what these additional reactions

61:33 pirates are about. Uh you know world of a fermenter um has a

61:39 of dilemmas in a way the low production means you can kind of limit

61:45 biomass levels, although you can get lot of growth from fermenters in conditions

61:51 you can um uh kind of minimize effect of the end product. That's

61:58 other thing that limits the fermenter, the organic acids and alcohols. State

62:03 and products can be inhibitory to Okay. And so uh in an

62:09 setting where you're growing these things and closed closed tank. Okay, you

62:15 you can face that issue. And but there are engineering ways to kind

62:20 take the liquid and kind of separate the two components of alcohol, for

62:25 , from the rest of the Um but you can also develop strains

62:30 that resistance that can that can handle levels of alcohol. So in the

62:34 industry There used to be the only like wine that was like 8-9% alcohol

62:40 . But they have since developed yeast that can that can handle high levels

62:45 alcohol. And now you can get that are upwards of I think almost

62:49 alcohol. Okay, so um so the easter back firm. Can you

62:56 that? Okay, um now fermentation can be, you know, it's

63:03 what the generally what causes cavities in mouth teeth. Right, ferment fermenting

63:08 creating acidity that kind of break down enamel on your teeth. Um

63:15 so fermentation. So now we're gonna into if you go from pyre bait

63:20 there is a terminal except er And the bacteria is capable. Now

63:24 can go to respiration. Okay, then we'll go from power of eight

63:30 a set of kuwait. Okay, I mentioned earlier that the analogy of

63:35 is glucose and we rolled down. put some energy and rolled downhill,

63:40 off energy. We've got energy Uh And now we're at the bottom

63:45 . So now we have to energize bait. Okay. And what we

63:49 for that purpose is introduced. This a molecule. Okay, so co

63:56 uh after written like Seiko it's actually sulfur molecule mm hmm. Like

64:05 Okay. Where there's a high Remember the squiggly line. Right?

64:08 see that A. T. Is a high energy body.

64:11 so this um so obviously a number a lot of these components involved in

64:17 that causes are many think vitamins are involved that you're you're familiar with like

64:23 B. One and B. Two are all involved in this process.

64:28 cho cho A is actually derived from acid which you may have seen on

64:34 cereal box label pentatonic acid goes to co a material. And uh so

64:42 we attach this portion into a right, that will energize it.

64:48 , so that's what we do in process is to to do that.

64:52 then the CO A C. The is what funnels into the T.

64:57 . A. Cycle. Or Krebs um also known as but in the

65:02 of forming a Sudoku way do produce energy and then th okay you do

65:07 card box late, you're going from to 2 carbon, so C.

65:11 is lost. Um But then this into, as I mentioned, the

65:16 cycle. Okay, so Krebs cycle one of those what's called a central

65:23 in metabolism. Okay, if you at a metabolic chart you would have

65:28 reason to but if you do you'll a little circle down in one corner

65:33 a bunch of arrows are going to and a bunch of arrows are going

65:35 from it. Okay, and that's Krebs cycle is one of those.

65:39 it's it supplies both to tabular ISm and apple is um okay, both

65:46 those uh beyond uh you know, that get that get oxidized and eventually

65:53 into here um proteins, fats, that are broken down for food,

66:00 funnel into the Krebs cycle, fats are broken down actually funnel in through

66:06 through here through a single core And uh so it is and of

66:11 many of these intermediates in the Krebs are building blocks to make things like

66:16 ties and so forth. Okay, like I said, it's a central

66:20 in metabolism. And so but you , for our purposes it's produces lots

66:25 energy. Okay? And so you see it in A. D.

66:29 . Formation. F. A. . H. To another electron carrier

66:33 a Tps. Remember this a teepee , it was one of those substrate

66:38 false relation ways to make. So now there's two ways to look at

66:44 production here. It's per going in you can look at as a per

66:52 post. Okay, So so remember for each glucose you eventually formed to

66:59 coa ways. Okay, so though each of you look away, it's

67:05 , two, three and A. . H. One F.

67:09 D. H. 18 ep if look at it as a per

67:14 Okay. It's just doubled right there twice through going through once.

67:20 So we doubled the number. And um uh so by this point the

67:27 of glucose is complete. So we've our C. 021. They're and

67:32 okay. And so uh the and what we're left with and well,

67:39 gonna write it here but don't worry it because we're gonna talk about it

67:42 time is we've accumulated six plus uh from here up here from para beta

67:56 . And then plus two from black . So we end up with +6789

68:01 N. A. D. Okay And we have to F

68:06 T. H. Two. So these We're gonna funnel into uh electronic

68:12 chain. Okay. And we'll get I said paper like around theoretical yield

68:18 like 34 https through that. um now the complete oxidation of

68:31 So has mentioned we are I'm just here. Okay, so we've got

68:43 the overall process here and so it's stages, right? Like

68:48 Okay um pirate oxidation. Okay. C. A cycle. Okay.

68:55 then finally electron transport chain. so um capturing energy along the way

69:02 through substrate level phosphor relation here in and then through oxidative phosphor relation.

69:11 ? That's what these boxes are all . Electronic carriers here here in

69:17 Right. Ending up And the electron chain that's oxidative foster relations.

69:23 And so as a result, 34 vs 4. 30 40 pieces

69:30 oxidative false relations for by a substrate relation. So and so you can

69:37 how you're aspiring respiration mode is better a fermentation mode. For that reason

69:41 amount of air do you produce? , so um and so again,

69:47 only does this represent oxidative phosphor relation also respiration. Okay, so you

69:54 energy in respiration via oxidative false Okay but also as well through subject

70:02 false relation but just not as Okay, so um many questions

70:10 so let's look at a couple of and it will cover some. So

70:17 is kind of 11 type of question familiarize yourself with kind of the

70:21 right? So I said no, the stages, right? What goes

70:24 ? What comes out? So if had to guess here, what would

70:28 um away. Okay. So you a B. C. D.

70:33 . F. G. Choices? , one down here. Alright.

71:17 2 1. Yeah, it is . Okay. These are a is

71:27 bait at this crop cycle. Of . Uh I'll let you this

71:34 You can let you figure out the of it. Okay, so one

71:38 one. Okay, so look at . Okay, looking for the true

71:46 . True statement. Okay. Mm . If there is one so read

73:02 , Okay Catch up and let me to go 321 all over the

73:14 Okay, that's uh I'm gonna say . We'll discuss it on monday.

73:23 . You gotta go to lab. got allowed to go to keep you

73:26 suspense for the next five days. do the question again on monday.

73:32 you have five days to see if like your answer. Thank you

74:01

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