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00:02 OK, folks, welcome to the part of chapter six where we're continuing

00:06 discussion on microbial growth. So last we looked at um the physical and

00:12 chemical requirements for growth uh as well growth media. And um and today

00:22 gonna look at um growth dynamics a bit more about gross medium and end

00:30 uh biofilm formation. OK. So always, there are the learning

00:38 This is a checklist to, to through after you finish this module that

00:44 uh um can, can answer OK. So uh continuing with the

00:48 medium. So remember, we combine the chemical requirements for growth into a

00:55 medium and then we of course incubate at proper conditions provide adequate levels of

01:03 if required, et cetera. And we can also look at growth media

01:07 terms of uh functional type we call . Um There's often what's called a

01:13 purpose medium that will grow a number different types uh there, but there

01:18 no one medium that will grow of course. But uh oftentimes we

01:22 to what's called the heterotrophic medium. a general purpose medium is would be

01:26 like a nutrient, a a nutrient that fits that description. Um generally

01:34 type, a complex type of medium that um enriched medium. So there

01:40 we kind of try to provide conditions to favor the growth of specific types

01:45 others, particularly it comes in use uh environmental samples. Recall when a

01:51 kind of did this to to be to uh discover the little tropes.

01:57 so you provide conditions that will uh specific to a certain type you're looking

02:02 and then that will tend to only tend to favor their growth over

02:06 Ok. If you, especially using media, if you're trying to find

02:11 types and samples that tend to be in number compared to their uh

02:16 and you can oftentimes do this by using specific nutrients that you,

02:20 know that favor, favors their Ok? Uh Anaerobic growth, of

02:25 , you'll be dealing with uh anaerobes don't uh that cannot live in the

02:28 of oxygen. There's, there's there are methods to do that.

02:32 It can be kind of laborious, whatever means you use, you have

02:36 keep oxygen out of it. So typically have to displace that by bubbling

02:41 gas and it is very typical you um uh what are called aerobic chambers

02:45 do your culture work. Uh The exclude oxygen. Uh So, um

02:51 , it's certainly done and has been for a long time. But uh

02:55 number of protocols are developed for But again, it involves uh it

02:59 be a little laborious, having to , do the things you need to

03:03 to keep it anaerobic um as So you can um different types of

03:10 testers, different media formulations that will you to detect, for example,

03:15 of certain types of sugars um to for different metabolic properties based on oftentimes

03:22 reactions you see occurring in media uh well. You can just take samples

03:26 , of cultures and, and test different types of enzyme activities, things

03:30 that. So uh media is gonna that purpose as well. The the

03:33 paced negative positive is an example of by chemical tests. They're is looking

03:38 uh for the ability to, to fats, for example, and you

03:42 see that by this organism producing a which degraded the fat in the media

03:48 it has these light pace enzymes to that with. OK. Um The

03:54 aero tolerance, the the fluid like looking at growth patterns. That's an

03:58 type of medium that you're testing to what's the behavior uh to oxygen of

04:02 microbe. OK. So a couple examples there then of course, we

04:06 a differential medium and we'll talk about and out for this one.

04:12 Um As well, you have, talked about forms immediate. So solid

04:17 liquid. There's also a solid You see over here on the upper

04:21 , called slants or auger slants can used as well. Typically, these

04:25 used for um storing cultures because tubes take up small space in the

04:31 uh which is typically where you'll store lot of your live cultures. And

04:35 that's typically where slants come in to . You don't really use slants to

04:40 single colonies as you can see from very thick yellow streak line there.

04:45 but that's more for storage of cultures . Um So culture media types talked

04:52 this last time and then the um purpose for each of those types uh

05:00 the medium. So, selectively, uh uh there's additions to the medium

05:06 will uh inhibit certain types. Uh an example of that here. So

05:13 media is one that produces color, typical kind of uh reactions that produce

05:19 uh that can tell you something about metabolism. OK. So uh there

05:24 be media that can be only there can be a media that can

05:27 only differential, there can be a that can be both types.

05:31 So the Heins and a you see is is both, both of

05:36 it's both selective and differential. So it has chemicals that prevent growth of

05:41 positive bacteria. And so it favors growth of gram negatives. That's how

05:46 selects it's differential because among gram negatives grow on it, you can detect

05:51 they ferment lactose or not or produce sulfide, which can be a metabolic

05:56 product. And so the hydrogen sulfide up as a black color, uh

06:03 fermentation. So shows up as kind yellowish colored colonies. Ok. So

06:08 actually differentiate two different features here, fermentation plus or minus uh H two

06:15 formation. So again, it's both and differential blood art is a type

06:20 only differential because there's no agents in in agents in there that will inhibit

06:25 microbial types. But um for, other types that have certain types of

06:31 enzymes called hemolysin homos, break down blood cells. Uh there can be

06:36 degrees of that. So in you see a, a microbe that

06:40 cleared the area where it's growing because lied to red blood cells. Uh

06:45 a type of hemolysis, we call beta hemolysis. The middle one in

06:49 B is one exhibiting what's called alpha . So it's like a partial um

06:57 . So it kind of basically it the hemoglobin in the red blood

07:01 creating this kind of greenish color with little bit of lysis. So,

07:04 we call a partial hemolysis and then is one where there's none. So

07:09 A is actually used oftentimes to cultivate . Uh strep throat organism is one

07:16 would show an a type of complete hemolysis, oftentimes it can be

07:20 and you see the clearing like you in a and you do microscopy and

07:27 gram positive cox chains. That's pretty presumptive for uh strep throat bacterium.

07:34 So the blood art was used a in clinical type of microbiology.

07:40 It's a little bit about dynamics of . So uh we all we know

07:44 of course, bacteria divided by binary , right? And so when we

07:48 about uh generation time, OK. Generation time is really the, you

07:54 of it two ways it can be time for a soap to divide in

07:57 as you see there. Uh But it can be the time for a

08:01 to double both those, both those you the generation time. OK?

08:06 in growth, you're looking for really , what's the rate at which these

08:11 are forming? OK. So you an idea there in a green box

08:15 , of um really how fast the cells can grow or I can go

08:20 one to a million uh in 6 8 hours for E coli, for

08:25 , under optimal conditions, uh we look at the population size represented by

08:30 equation where in its number of cells at uh at some 0.0 times zero

08:36 the start and in t at, some point in the future, and

08:42 can, if you calculate the number generations and we can go to,

08:45 the two to that power times number you started with in zero, we

08:50 you the number of cells at any time. OK. Of course,

08:53 have, you have to figure out many generations have passed. OK.

08:57 um uh the, the rapid rate growth uh certainly can, certainly happens

09:05 a laboratory because we control conditions and , and we use pure cultures.

09:10 uh but here in the lab, can grow, um we'll grow at

09:15 we call unlimited or what's called exponential . OK. Kind of the growth

09:20 see in that green box there uh to 2 to to 4 to

09:25 et cetera, right? That kind uh exponential logarithmic if you will progression

09:30 typically logarithmic exponential growth are kind of interchangeably in microbiology to express this really

09:36 rate of growth. OK. And base 10 comes in because whenever you're

09:41 , you're looking at numbers which are by a big range, right?

09:46 talking about one digit up to 10 the sixth range or beyond, we

09:51 to compress the scale. So we um make it more manageable.

09:55 you see the launch of the base think of the PH scale. It's

09:58 same thing. It's also a long 10 scale. Uh because to reflect

10:02 big increases in in hydrogen ions that occur over the span of a PH

10:07 , for example, OK. So lot of base 10 is typically used

10:10 , to when you're dealing with numbers vary by a very large amounts.

10:14 ? To kind of help compress And uh we can see that

10:19 OK. So it's just, I do this in just to show you

10:22 of, you know, if if you plot a growth using a

10:26 based 10 on just regular graph which is what you would see um

10:32 kind of here on this curve OK. Uh rather you plot it

10:38 , not using log to base but you use kind of the numbers

10:41 see there that it doesn't really reflect rate of growth going on. But

10:45 you, if you convert to log base 10 number of cells,

10:52 as you see here, then you this linear function. And so that

10:58 really the fast rate of growth that's , right? Which you really wouldn't

11:02 from this curve by not using log base 10 because the numbers are so

11:06 and spread out, right? But we compress the log to base

11:09 then you can really see the rate growth and we can use that information

11:14 calculate how fast it's growing. And do comparisons like maybe you want to

11:18 an antimicrobial agent and and how it's growth and you could actually get the

11:23 numbers and see, OK. Is uh is growth going down something like

11:30 or like this? Ok. Is affecting growth? So those are kind

11:34 things you can do? Ok. the point is that this rate of

11:38 can be very fast under optimal Ok. If you provide bacterial species

11:45 a in a shape, fast growth with everything it needs, they can

11:49 at these very fast rates. Uh not. So the case in

11:53 because of course, they're competing with , they are oftentimes nutrients are

11:58 So they there can be a limited in nature, but it occurs in

12:03 here and there where there happens to an influx of nutrients, let's

12:06 OK. But typically it's not the um in nature. OK? But

12:11 it is in lab because you can everything. And just to give you

12:15 idea of the power of the doubling , right, the generation time.

12:20 this is what this example is meant show. So if we have uh

12:23 start with 10 cells and a bacterial doubles every four hours, what will

12:28 the population size after 20 hours? if the doubling time is 15

12:33 So we're, we're doing the same , 10 cells. How many do

12:36 have it for 20 hours with two doubling times? OK. So here's

12:42 we set up the problem. And so this is basically what we're

12:48 on both sides here, right? with different generation times. So before

12:52 doubling time that we are that for value represents one generation every four

12:59 That's what doubling time refers to generation , right? Is how many uh

13:03 the number of the for two One generation? And how many hours

13:08 minutes? OK. So we're asking 20 hour timeframe, what that would

13:13 , that would equal five, And so that's the number, this

13:17 the number of generations that have passed that time frame. With that doubling

13:22 , we just plug in numbers right? NT equals N zero.

13:26 started with 10, this is N N two to the fifth, which

13:29 what we calculate this with 320 cells 20 hours with that doubling time starting

13:35 10 cells. So we go from to 3 20 in 20 hours with

13:40 four hour doubling time with a 15 doubling time. So that's one generation

13:44 quarter hour, right? Or 15 gives us 80 hours cancels out.

13:50 to two to the 80th, so can see that significantly four hour versus

13:56 minutes doesn't seem like a lot but in the end, right? The

13:59 of cells you're getting 10 to the cells in that 20 hours compared to

14:04 that for our doping time. So you an idea of really how fast

14:09 optimal conditions bacteria can grow. So we look at what's called batch

14:14 so here we are looking at um in batch growth, what you're basically

14:23 is taking a a receptacle that will your growth medium and then you

14:33 OK. So we begin to batch by basically not turning a growth medium

14:38 then basically just monitoring the rest of way. And we don't do any

14:41 manipulations to the culture other than taking and and getting a growth curve,

14:46 is what we call a batch growth . OK. So again, with

14:50 inoculum inoculation of the medium, we um be in what's called lag

14:59 OK. So that's the rest stark think of this as an acclamation

15:05 Uh the cells are gonna use their , so to speak, there may

15:08 slight temperature changes uh that have occurred where they came from. So

15:12 you're not getting as coming from some , whether it's a plate or another

15:15 culture, they're coming from there into new medium and there can be changes

15:20 may occur. Maybe it's a completely growth medium with different nutrients. Uh

15:24 may mean it may have to um different genes in order to be able

15:29 utilize new nutrients, uh may have turn genes off. So uh collectively

15:34 all amounts to there being a period adjustment, adjustment and, and reading

15:41 before uh vigorous growth can begin. all that's what we call is occurring

15:46 the lag phase. OK. So no growth. The soldiers just have

15:50 entered this new medium and they're getting and doing what they need to do

15:54 adjust and then growth will begin. when it does, it can happen

15:59 rapidly under optimal conditions. Ok. of things can affect lac face.

16:03 can be, you know how, many cells are you adding to

16:07 Are you adding to this new Uh is the incony coming from a

16:12 that's very old. Maybe there's not lot of live cells there or maybe

16:16 , maybe it's a very fresh medium it's the same medium you're inoculating

16:20 So um maybe the media comp compositions very different or maybe they're the

16:26 All right. So all these can will determine how long or short the

16:31 phase is and it, and it vary. OK. So once active

16:36 has begun, then we're in lock . And of course, this is

16:40 be its most about the active Uh fastest growth rate you see,

16:44 cell size even increases a bit because , you're gonna see lots of cells

16:48 are in states of dividing. So of cells will be looking uh if

16:54 a rod shaped cell will be a getting, then they may have a

16:57 here that will form, that will the cell into two. So lots

17:01 cells kind of uh many cells are of kind of in this state of

17:06 bigger than dividing. And so that's you see this in long phase.

17:11 the uh um and it's really as if you're measuring some kind of uh

17:19 with the cell, some kind of , that's when you would do it

17:21 a log phase because you know, gonna be at, at its highest

17:24 typically will be in, in mid , mid log phase approximately.

17:31 Now, as we get down to late log phase, which is probably

17:35 be somewhere around here, excuse So as you get the late lock

17:53 , excuse me, kind of around phase, uh then we're gonna begin

18:03 become limited for nutrients. Ok? of course, at that point,

18:07 have such a high cell density, not gonna have enough nutrients to feed

18:10 . So of course, the growth is going to begin to slow down

18:13 we get the stationary phase. Um of course, the growth rate and

18:18 rate are pretty much equal. So makes us a flat uh plateaus.

18:23 phase is characterized by a plateau And then of course, it becomes

18:27 matter of survival now. So, are becoming nutrient limited. Uh And

18:32 it becomes a matter of they're And so it becomes a matter of

18:36 doing things that will enable their survival if you know, nutrient, maybe

18:43 are added or something favors their Of course, it won't in batch

18:47 , they will eventually die. but they try to prolong death as

18:51 as they can. And, and of the things they do is to

18:53 a little bit smaller, smaller not less uh cell mass to keep

18:57 with. Um they'll begin to uh off a lot of functions and only

19:03 functions that are necessary. So a of uh gene expression is turned

19:09 Um So again, it's all in effort to kind of conserve energy.

19:14 uh waiting it out, prolonging survival the hope that maybe things will get

19:21 . OK. But eventually, of , in match growth, it doesn't

19:24 they'll, they'll run out of food . And then of course, cells

19:29 to die and just like growth can logarithmic. Uh There can be an

19:35 algorithmic decline in death phase and that can happen. So you can see

19:40 in log face growth very rapid. too will death be very rapid as

19:47 ? And that's what we focus on chapter seven is, is, is

19:51 negative slope of death phase? How we make that fast? And,

19:54 , and very, you know, negative slope. That's what we're interested

19:58 in, in when we're controlling growth , and adding antimicrobial disinfectants is is

20:03 really increase death. OK? Because can, it does, it can

20:08 does decrease at a rate that's logarithmic exponential like log phase was time um

20:17 one kind of uh thing you can . All right is with the batch

20:22 , you can actually uh feed nutrients you wish to get more cells.

20:27 if you're at, so if you're a point like you see here,

20:31 ? And batch growth, right? we can add nutrients here,

20:39 And that will prolong the growth. so we can actually get beyond what

20:44 would if we just were stated batch . So fed batch growth allows you

20:48 add nutrients to, to the growing so that they can achieve a higher

20:53 density if that's what you're looking OK. And that's, that's,

20:58 is actually kind of common to do you, if that's what you're

21:01 if you're trying to achieve a higher yield for various reasons, it's what

21:05 call fed bats growth and the, the, the nutrient you basically

21:10 it's gonna be carbon, carbon is be the, the nutrient has the

21:14 effect in terms of determining cell final yield. So if it's a

21:19 you could add glucose to it. example, uh if you know the

21:23 can use glucose, you'd add glucose glucose at that point of say maybe

21:27 mid log phase, that glucose and it will, you use that

21:30 and grow beyond what it would if , if it didn't have the

21:34 OK? Um As well, you even control growth even more right,

21:40 can uh have a microprocessor that uh you to grow the organisms. Uh

21:46 an integrated system using a bio reactor has uh automated pumping. So you

21:52 pump acid and base to maintain ph you can add more 02 to,

21:59 supply the needs for an aerobic organism as it grows, uh you can

22:04 faster to, to add more air it. So, and this is

22:08 automated. So you can have, can attain very high yields basically because

22:12 controlling all the all the growth parameters um making the cells very happy,

22:18 , which enables them to grow to high cell densities. Uh those that

22:22 work in industry in uh biotech. example, these are the kind of

22:26 that you might do if you were uh working in, in um in

22:33 field. OK. So we'll close session with biofilm formation. OK.

22:40 biofilm formation. Uh uh So there's number of phenomenon that microbes that are

22:47 to microbes that relate to, to nutrient conditions. OK. We talked

22:54 uh couple modules ago about endospore That's one of the triggers for that

23:00 actually lack of nutrients, right? can trigger that. Uh This phenomenon

23:05 one that's actually triggered by plentiful OK. The other thing that's essential

23:11 biofilm formation is um its formation is surface. So biofilms are all about

23:19 . OK? That's, that's where initiate and that's where they grow from

23:23 surf a surface right now, surface be your teeth if it's plaque,

23:26 example, uh it could be uh a rock in a stream where mats

23:32 standing water, even a form of biofilm. Uh This being pre nursing

23:40 and many of you being in health eventually uh biofilms are important there because

23:45 um different types of uh uh devices in um health care such as

23:55 um uh heart valves, uh knee , hip replacements, um breathing

24:06 All these are devices that are, are packaged sterilely, but if not

24:10 properly can lead to infections. And of these are biofilm producers, these

24:17 that will form on the surface and from a medical standpoint, these

24:21 these can be quite, quite problematic in many cases dangerous and hard to

24:27 . Ok. So we'll look at that here in the process, you

24:33 , right. Again, it's all adherence. Soria is typically very

24:37 Fimbria coli are important in this process that's what enables adherence to a

24:42 And so if we look at kind the process here, right. So

24:45 , it certainly it's characterized by a , it's characterized by having lots of

24:49 there and that triggers the accumulation of and lots of bacteria to form these

24:56 mats of growth that you see OK. And um so basically the

25:06 form biofilms can actually have two what are called planktonic cells and those

25:10 are called um uh often called swimmers and stickers, but they

25:18 they adhere to the surface. platonic cells are kind of your motile

25:23 that uh will seek a favorable And then once they do, they

25:28 of lose their flagellum. And now all about the Riri allowing them to

25:32 to a surface and they may collectively together to form micro colonies that then

25:38 on to form uh larger colonies as one of the initial phases of this

25:45 to form this very thick sugar, called exo polysaccharide layer that, that

25:52 all of the members of the OK. So they kind of all

25:55 this the of this material is triggered there's enough cells present on the

26:01 And then this begins the the formation the biofilm and, and enables.

26:07 we now have initially it's growth in two dimensions on the surface. It

26:11 extends beyond that to three dimensional growth forming these biofilm towers that you see

26:17 . OK. And again, this gonna be able to only be able

26:20 be sustained as long as there's a of nutrients coming through. So it's

26:24 common to see these in, in things like uh in pipes. Uh

26:28 example, sewer pipes, et cetera there's basically a steady flow of nutrients

26:33 by the platform formation on your teeth you're constantly, you know, you

26:36 saliva and nutrients in there that can the biofilm. Um And so as

26:42 as you have a supply of nutrients that can sustain the biofilm. Um

26:48 of course, as you get into dimensional growth, you know, to

26:52 that all the members of the population be fed, actually, holes can

26:56 created so that nutrients can flow in out and around these towers to,

27:00 be able to feed everybody. Uh Eventually though it, it can

27:05 that the biofilm disappears because simply there's enough nutrients to feed everybody and then

27:10 begin to kind of dissolve and then cells revert back to their motile form

27:16 the plantal planktonic types. And then will go seek out uh a more

27:21 environment and start another biofilm. So that's how these things uh form

27:28 and disappear. But um you for a bio that's, that's uh

27:34 and and is is sustained these of , can looking at the BioFoam

27:39 you can see there can be several here and that's what makes uh that's

27:44 makes um uh let's let's look at real quick here. So we look

27:50 the uh uh catheters uh insertion of cat or some other kind of device

27:56 provide the surface for that, And so a biro can form a

28:01 thick layer and that thick layer will can actually retard the diffusion of antibiotics

28:08 them. And so that's why it's hard to get uh biofilm infecting types

28:13 bacteria uh because of their resistance to things. And so uh antibiotics have

28:19 hard time penetrating. And oftentimes there be differences in, in,

28:24 in the cells themselves, types that on the periphery of the biofilm versus

28:29 that are more internal and you can different resistances uh evolve. And so

28:34 infections with these biofilm types are, very, very um problematic. Um

28:41 And, and it's certainly something if , if you're gonna, if you're

28:45 end up in health care, you're gonna be likely see, see these

28:49 some of your patients. And um it requires um again, this is

28:55 treatment with antibiotics that takes not uh week or 10 days, but more

29:00 uh several weeks and even into months , to take care of this.

29:06 , um so certainly many of these , are medically important types.

29:11 So uh that closes out then the on growth. And um uh so

29:20 covered here in this section uh uh little bit more about growth and

29:24 such a differential medium uh growth including like growth generation time, uh

29:31 phases of growth. So lag log death phase. So you should be

29:35 with those and of course, ending bio films. OK. So next

29:41 , we will go into chapter seven we're looking at control of, of

29:44 microbial growth. So we'll touch on of these uh topics of um the

29:51 and chemical growth factors. Uh But in, in, in controlling

29:55 it's about um really focusing on the on the death phase and, and

30:01 and reducing microbial numbers and to do at fast rates. And so we'll

30:06 at the, uh what's involved in . Ok. All right. Till

30:10 time. Thank you folks.

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