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00:01 Ok. Yeah. Yeah. Ok, me. Ok, let's

00:27 here. Testing, testing. folks. Uh ok. Very

00:44 I swiftly you're gonna sit like that whole time. Ok. Ok.

00:50 won't look at you if I I'll ask, right? Ok.

00:57 , welcome. So, uh I my laptop back. So quicker questions

01:03 the whole nine yards today. uh, let's see here. Um

01:09 , so we're starting, uh finishing three today on to chapter four.

01:18 uh the usual stuff begins again, ? Weekly quiz, smart work,

01:21 cetera, et cetera. So, , oh, so let me before

01:25 start. Uh, so those of in lab? Ok. So just

01:30 couple of words about that. So uh unknown project starts next to

01:37 Thursday. Ok. Number one, works at a different pace,

01:44 So if you're as you begin, , whatever day you start Wednesday or

01:50 , um, it's with a, given a tube of an unknown with

01:53 couple different types and a gram positive a gram negative step one street

01:59 right? So if you're not, you don't recall that or you need

02:03 brush up on it just look look at the uh go back and

02:07 at the video that's posted or the notes. What have you OK?

02:12 Because the media you use throughout not for, you know, street plate

02:18 , biochemical tests. These aren't a pit supply of these things.

02:23 It's one for student or two N plays because you're gonna use one for

02:27 initial streak and then one for your . But um yes, within

02:32 things can be I account for like ups, OK? But um gouging

02:40 order while you do the street not a mess up, it's still

02:42 to do. That means that you to gouge all the. But

02:46 the point is um know what you're before you begin doing it.

02:51 You need to review a technique or . Go ahead and do that.

02:56 The other one is you may you're the person beside you,

03:02 Um Pro proceeding at a maybe quicker than you. That's fine,

03:07 This thing is built in to account different or people working at different

03:13 That's just natural. OK? So wig out if the person next to

03:18 has already gone to step three or and you're not there yet.

03:22 That's fine. Right? They don't lag too far behind, right.

03:27 that's why this two week period, two week period. Uh not next

03:33 , but the week after those two weeks are nothing but unknown,

03:40 ? Your goal is to at the of that two weeks, your minimum

03:43 is to have a subculture of your , right? You got that and

03:48 gonna be the biggest hurdle for The biggest hurdle is that once you

03:53 your subculture of a pure culture of gram negative, you're pretty much golden

03:59 then it's all downhill right? After , it's not fighting biochemical tests,

04:04 ? But that this first part is be the hurdle. So again,

04:08 worry about how quick or slow somebody to you is working. You do

04:12 own thing. No, you wanna progress, of course. But your

04:16 goal at the end of those two is to have uh a subculture of

04:21 gram negative even even if you not a disaster, but certainly by

04:27 following week, right? You got . You should have it.

04:31 Granted many of you will get Get that like in the first

04:36 maybe the first week. OK. again, everybody works at different paces

04:41 got I think six weeks to finish thing. So more than enough

04:46 So don't panic if you're not, know, keeping up with your neighbor

04:51 whatever, right? So um the is, is you can only work

04:57 the project during your lab time, ? So don't come in and guest

05:03 another lab, just show up at lab. Time. That's not yours

05:06 catch up because remember you got plenty time. Don't, you don't need

05:09 have that extra time. You've got of time to do this.

05:13 Um Any questions about, if anybody's the lab, any questions about

05:18 Ok. You're gonna go over this in the lab next week.

05:22 but just be aware um, before come to the lab next week,

05:26 OK, I'm doing a street Do I remember what that is?

05:28 right. So I remember that. right. Um So let's start with

05:36 little bit of a recap. So we've got uh all right.

05:41 context uh we're going through, The pro cell, right?

05:48 what's it got? What are the , functions, structures, et

05:52 right? So we are um we at the end. So we've gone

05:59 a cell membrane, right? That of that and a little bit about

06:05 a little bit about osmosis. Um the gram uh negative gram positive cell

06:12 and what that entails. Um And we began, I think last time

06:17 um the atypical uh types of bacterial . OK. So uh the the

06:26 that lack AAA cell wall, Basically, the cell membrane is all

06:31 got. OK. The um uh right? The arch archaea that have

06:40 don't have the identical structure of a I can, bacteria does, but

06:45 has the uh something slightly similar that call pseudo then um then we looked

06:54 this one mycobacteria. So uh they have PEP ICA but the proportion of

07:01 is small compared to this, this material, these mycotic acids,

07:05 these very hydrophobic, very long hydrocarbon that uh affect their, that the

07:14 net effect of this is to to kind of determines how they look,

07:20 , how they grow in culture, kind of stick together in liquid

07:23 how they look on a plate. they kind of have a weird appearance

07:26 the plate, very waxy consistency, thickness of this uh you know,

07:32 material coming in now, right? they grow slow for that reason.

07:37 So again, all attributable to the of they have OK. Uh Then

07:42 think we went into uh different types uh outer material if you will,

07:48 . So, biofilm. So biofilms not a cell individual thing. It's

07:53 collection, it's a product of millions cells, right? A biofilm,

07:58 but it is on the outside of , right? An extracellular matrix fly

08:03 only loosely associated with the cell. a byproduct of metabolism. Um capsule

08:09 a gene encoded uh product. Uh place Saar Saar protein combo tightly bound

08:18 cell. It's a factor. It um it can uh kind of make

08:25 less susceptible to your immune system. . We'll get more into this

08:30 Uh in the last quarter of the , but um it definitely is a

08:34 factor for many that have then uh went into cyto skeletal elements,

08:42 So the the these these three types on uh the cell shape really.

08:48 uh all of them have that FTSZ . So all these cytoskeleton elements and

08:54 are about um maintaining shape in some , but facilitating a synthesis, synthesis

09:02 cell wall material, envelope material, cell division, OK. Kind of

09:08 that realm is where these operate. so uh all the all three bacterial

09:15 here will have that FTSZ ring because what mediates separation. OK. But

09:21 may, in addition, a rod will have these Mreb proteins throughout the

09:26 of the cell. And that's how synthesizes its like. And then in

09:31 to those two, this comma shaped of bacteria have have a have it

09:38 one side of the cell to kind create that uh comic shape to

09:43 OK. So uh again, all of collectively aspects of functioning in aspects

09:50 of cell visions of patient cell et cetera. OK. And then

09:56 we looked in so then we kind got the oh cytoskeleton elements take us

10:02 the cells and now we're kind of out in the cell. OK.

10:06 inside of it? And so remember nucleoid, right? So it's the

10:10 of the lighter area it just represents a chromosome, but it's just the

10:16 occupied, there's no membrane surrounding OK. Uh It's not, it's

10:21 an organelle. OK. It's simply the area in the cytoplasm occupied by

10:26 chromosome. OK. Then of millions of ribosomes, et cetera,

10:31 solutes and so on and so OK. And this pheno phenomenon

10:36 of polyribosome or polysome formation. So relates to um occurs because there is

10:45 nuclear membrane. Everything occurs uh in cy cytozole cytoplasm. And because of

10:52 there, because there's no division like is in ourselves um of these two

10:58 , transcription and translation, these can virtually simultaneous. So as a transcript

11:04 formed, right, expressing a gene very quickly, rhizomes can plop on

11:09 begin translating. OK. And so enables the cell to produce lots of

11:14 very quickly, right? It's one the list of 10 things or or

11:19 of why bacteria can grow so right? Small chromosome, small cell

11:24 can produce proteins very quickly to sustain high growth rate um among other

11:31 OK. And so, and then know the uh the uh oh was

11:35 right here right. The replication of chromosome, right? And how it

11:41 , right. So the the uh the A is where you get,

11:45 initiate the uh replication of the strands . And but then we we saw

11:50 time that even before uh this round division is complete, it's already working

11:59 , right? The what's gonna happen it becomes four cells, right?

12:04 so that's so it's kind of uh might say, thinking a hit like

12:09 thinking. And so OK, I'm be, I'm about to be one

12:12 , but not very quickly after I'm gonna be four, right?

12:16 to 4. So it's exponential right? So this ability to replicate

12:20 DNA so quickly enables that, So here we're, we're in,

12:24 still in one cell, right? still one cell. It's almost done

12:30 that. It's it has, it's copying the the DNA, right?

12:35 occurring, but it's already well under to the next round of replication.

12:40 when we have now four cells, ? 1234. So it go

12:46 it goes to show you how these can grow, why they can grow

12:49 quickly. OK? And so this can occur. So, basically going

12:55 here uh here to two cells, one generation, right? So that

13:02 occur in under the fastest conditions in coli 15 minutes, right? You

13:09 produce 20 generations in less than eight . OK. As long as it

13:15 humans to produce 20 generations. Hey , a year, two years,

13:23 than two years, 400 approximately 400 to get 20 generations. Think about

13:30 . Yeah. E coli eight All right. So um that's assuming

13:35 generation every 20 years anyway. um All right. So that takes

13:41 to. So we've covered all these here except so we're gonna start with

13:46 aging and then onto the remainder in any questions about any questions about any

13:55 these things in this block here? . Right. Yeah. A leading

14:07 strength. And also um no, we do that too. You Caros

14:17 the same mechanism. So we copy at the same time as well.

14:21 , it, it has to uh has that unique. Um I call

14:28 like her jerky motion because the leading for reading continuously, this other one

14:32 of got hops on and hops off keep up with it. And that's

14:35 , that's a universal process, bacterial whatever. Yeah. And you

14:41 question. Yeah, I had to uh I used to teach intra bio

14:45 do all the nuts and bolts of replication. So you still remember it

14:50 . Um The um All right. let's go into the remaining things

14:55 So, polar aging. So this so if you think about it,

14:59 basically what we're looking at here is asymmetry of a cell. OK.

15:05 you might think with a rod shaped , it's identical no matter what end

15:12 or pole you're talking about, But in fact, there is differences

15:18 . OK. So if we look um uh here's our cell,

15:24 So it, it, of course from a previous cell division obviously,

15:30 ? So it will have split, ? Cation, right? So where

15:38 the cation occurs, right? The process generates new cell envelope material,

15:46 ? So that's new stuff. Where the acceptation is not occurring,

15:52 end, the other, you know other pole, right? That's old

15:57 . OK. So if you look here is this cell right?

16:01 And so um we eventually we get . So now right here,

16:08 This is this will be the new right there. So, on this

16:16 in this one, right? That , that those will be the new

16:20 , right? Because it has new synthesized there. OK. Whereas out

16:25 , right, that's gonna be an pole. OK? That will be

16:29 old pole eventually. OK. So so you see right here,

16:37 So new, new the other end right? So, so what,

16:43 what does this mean? Right. cares about this? Well, it

16:45 out that uh the old poles, sides, OK. I'm sorry,

16:52 sides over here, the red ones um uh damage can accumulate at,

16:59 these ends. Um proteins that are not working so well begin to aggregate

17:06 the old poles. Now, why of the stuff is occurring is not

17:10 known, they just know what OK. OK. And so it

17:14 certainly contribute to the aging of the death of the cell eventually, but

17:22 some they've seen with some types, . The um uh in pathogen types

17:31 a, a proportion of w when population reaches proportions where there's more older

17:39 . Number Y is the new ones there's, there's resistance, there's some

17:44 resistance to antibiotics. Not, not known why. OK. But it

17:50 be a phenomenon of, if it's these damaged proteins or something, maybe

17:56 have some kind of resistance to the . So maybe that has something to

18:00 with that again. Not quite It's under intense study because uh if

18:06 is true, then this is another in which um bacteria can, can

18:10 resistant, right? Just what we , right? And so um that

18:15 mechanism also maybe is similar to uh growing. The presence of antibiotic is

18:22 strategy as well. So it may contribute to that uh and be in

18:26 kind of realm as well. So , antibiotics have specific targets,

18:31 They target specific proteins typically in a , whether it's a protein synthesis.

18:37 So wall synthesis um uh uh other targets. And so um the availability

18:48 those targets is most abundant when the actively growing because they have more of

18:55 available because they're synthesizing proteins, the are available or they're creating cell wall

19:02 because they're growing more targets are available it's growing and it's not doing any

19:07 it's not growing and not doing Ok, then that in itself can

19:13 it less susceptible to antibiotics because they , there's nothing for the antibiotics to

19:18 . It's in a no growth, doing anything both. OK. When

19:21 antibiotic goes away, then it begins grow again. So that may be

19:25 maybe this old pole, new Pole may somehow figure into that.

19:32 So very, very sneaky. Um Now, in terms, so

19:40 , this kind of represents, obviously asymmetry as well, right? You

19:44 an old and new post that they're identical, right? So there's there's

19:48 there. So similarly, other phenomenon forming an endo spores. OK.

19:53 too is typically a uh location specific , right? The endo spor forms

20:00 one side of the cell and not the other. OK. So you

20:04 have asymmetry there as you see the the clear use at the end

20:10 spores and you see it's at the end of the cell, OK.

20:16 These uh I mentioned this before the of the weird shapes uh a species

20:22 doesn't have a uniform shape like all rods or cock, but has kind

20:28 this intermediate branching and we call club forms. This this is due to

20:33 of asymmetrical division. OK. Where occurs maybe on one, on one

20:41 of the cell, not in the or uniformly and can, can create

20:46 weird shapes called pleomorphic. OK. Here's a very obvious example where in

20:53 species, it can have a right? Uh or a gem,

20:58 can switch back and forth. And the point is it's on one end

21:01 not on the other. So asymmetry. OK. Um, a

21:07 is simply just a, something involved in motion. It's a, I

21:12 that like an uh, an anchor holds a boat in place,

21:15 So it kind of holds in place a, on a surface.

21:19 and it happens typically if it's in , in a um nutrient rich

21:24 so it doesn't wanna leave it. it kind of sticks itself in that

21:28 to use the nutrients. OK. it actually reverts back to a flagellum

21:32 swim elsewhere when it runs out of . So, um but again,

21:36 here in this context is asymmetry found one end but not on the

21:41 OK. Um Oops any questions about about that? OK. So here

21:49 a question. OK. Well, and afters, right, let's open

21:56 . And so here these are things gonna talk about now. These are

22:02 up now. OK. So different of um pro inclusions or specialized structures

22:12 of a cell. Pli embry Magneto . OK. Let's see what these

22:20 all about. So we'll cover these after this slide. Oh OK.

22:42 . Mhm. Pause here for a . All right. Let's um count

22:56 from six 5432. Pause. What we got? Take a picture

23:10 that. OK. And we'll see question in a few slides. So

23:18 you'll change your mind, maybe you . OK. Next is OK.

23:25 structure. So um so these specialized , inclusions are often OK. So

23:38 one, no one, no one cell has all of them.

23:44 Two, many of these are uh metabolism specific, right? They have

23:50 certain metabolism type and it fits for metabolism. OK. Others are energy

23:57 , food storage type things. So , they kind of fit different categories

24:02 . OK. So the first ones are metabolism specific. OK. So

24:09 relates, you know, we're we're back to um metabolism stuff,

24:15 So we're gonna revisit that not in same, you know, context,

24:21 rather in terms maybe more practical aspect it now, right? And so

24:26 especially when we're getting into growth, ? We're gonna still revisit some of

24:30 same concepts we learned previously in 13 14. OK. So here the

24:36 Hetro thing, right? So remember Autotrophs CO2 right? Is their carbon

24:44 . Unlike us, we're hetero right? So and there's two ways

24:47 be an autotroph. OK. So Autotroph thing is CO2, right?

24:53 it takes a lot of energy. what's the mode of energy to make

24:59 go? Well, you can use photo troph, photo Autotroph or you

25:04 use in organic materials. Break it the little right? And so you

25:10 little trophy, photo, trophy. . More specifically correctly photo water trophy

25:18 chemo water trophy, same thing as Luther. OK. We'll go through

25:22 terms. We're gonna see these terms chapter four. So uh we'll revisit

25:27 again. But the key here is CO2 fixation. OK. So,

25:33 organelles that are not organelles, structures proo that this relates to. Um

25:39 thylacine, right? So, thyroids are where the photosynthetic pigments are stuffed

25:46 the membrane. So we're talking So we're not talking about chloroplasts.

25:52 . Yes, I know you've seen in the context of chloroplasts.

25:56 And that's true. But think of now as thyroids separate from a

26:03 right? Because they phototropic bacteria don't chloroplasts, right? But they have

26:09 pigments that they stuff into the membrane we call that thyroids. OK?

26:15 so you can see it's highly, can see the rings here.

26:19 it's basically a highly folded convoluted membrane basically using its phyto plastic membrane and

26:28 it up and stuffing it full of molecules or other pigment molecules.

26:34 So the carboxy OMs are specific to trophy. OK. So specific to

26:44 trophy. They can be present in photo tropes and, and lipes.

26:51 ? And it's where the kind of fixation is occurring. OK. So

26:56 active Co2 fixation uh generates kind of structures. And again, they're

27:02 there's not a lipid, there's not lipid bilayer around it. That's what

27:05 organelle would be, these are, can be protein covered structures.

27:10 So, don't think, don't think them as organelles, right? They're

27:12 kind of intracellular structures. Ok. so um the rubis is the shorthand

27:21 for the enzyme that catalyzes basically it takes the, the, the

27:27 and attaches, attaches it to a . That's what the enzyme does.

27:32 . So it's, it's uh the name is Ribis bios pate carboxylase.

27:39 don't need to know that uh because always refer to it as scope,

27:44 it's the enzyme that actually does the of the CO2 to the molecule.

27:49 . And if you have a lot that activity, you basically stuff it

27:52 a car because that's what those structures . OK. So um gas

28:00 So these are gonna be specific to aquatic um photo, OK? Living

28:08 water. And um the if so if you absorb light as living

28:17 we know, right, you need get to the right depths in the

28:22 uh for maximal absorption of light, ? And so a gas vale can

28:28 manipulated. And so you let some out or in and then in doing

28:33 going up and down the water So it kind of helps adjust it

28:36 the right level of um maximal light . OK. So um certainly a

28:47 will have thyroids, you can have , you can have a gas

28:52 OK? A chemo um Autotroph can certain carboxy, but they're not gonna

28:59 thyroids because they don't use sunlight. . These, these don't use

29:04 uh, but they can fix Ok. Um, they wouldn't necessarily

29:09 gas vas because they're not typically, , they don't need to adjust their

29:14 in terms for sunlight. So they really need that. So, the

29:18 here is to when we go go over these structures and specialized structures

29:22 whatnot, you know, who, , who might have it, who

29:25 not have it. OK. So and, and then also movement because

29:31 different ways cells can move, And gas factors can be technically be

29:37 mode of movement because it's moving it point A to point B,

29:40 And we're gonna see other structures that create movement as well, right?

29:44 kind of the point is the kind um you can think of these all

29:49 structures we're going through as like a , right? But then try to

29:53 some connections in terms of, you , OK. With this metabolism have

29:57 or not? Um Is this, this represent movement or not these these

30:01 of things? OK. Um Store. So these represent the um

30:08 storage, energy sources, um food um but also a metabolic byproduct.

30:16 this, this one here is a storage. OK. So mero Granules

30:22 so Coria bacterium is a species that known to produce these a lot and

30:29 you stand them with methylene blue and dye stains these Granules. So you

30:34 see how intensely intensely blue they Uh all it is is just

30:39 the phosphate polymer, that's it. so how it becomes an energy source

30:44 to simply just um take one of phosphates, add it to an AD

30:51 and make an A TP. Let me re remember, remember the

30:58 for this way of making an A substrate level phosphorylation, right? Um

31:09 I mean this and these polymers can hundreds, hundreds of these in a

31:14 , right? All wound up in . And so it's a quick energy

31:18 if it needs to. OK. polysac right? So like plants produce

31:24 , we produce glycogen with glucose right? Uh bacteria can produce both

31:30 they can have both types as an source sulfur Granules. So this is

31:35 byproduct of this metabolism here. So this is Lioy, right? Using

31:42 two S oxidizing it. Elemental sulfur a product. And uh for this

31:47 type, the elemental sulfur is what see these little yellow Granules here.

31:55 ? That's the byproduct of the OK? And it holds on to

32:00 . So it kind of just stays the cell, other species actually let

32:03 go and so it ends up outside cell. Others can actually use this

32:09 oxidize that uh further to sulfate or . So you see different metabolisms,

32:15 this one kind of holds on to and you kind of see it,

32:18 it in the cell, OK? lipid. So fat can be a

32:24 of fat can be a polymer. so here is PHB and yellow shown

32:31 yellow is the repeating unit, So you link those together to make

32:37 Phb polymers. OK? And it's an energy source, right?

32:42 fats are particularly rich in energy. . And bacillus is one known,

32:47 known to produce these, these blobs see here, these are all PHV

32:51 . OK. The type of OK. Um OK. Here is

33:00 next question. OK. So we're talking about making connections. OK.

33:07 see which of the following could be to some way in any, any

33:14 of motion. OK. Any type motion. No. So going from

33:21 A to point B, right? any or all of these or none

33:26 these be involved in that? Hi. So, yeah.

34:07 It's cut down from 76 218. . And survey says GG is

34:24 all of them could be end up . OK. So the forum I

34:29 is probably obvious that that's gonna be . OK. The magnetism. So

34:35 of this as a compass. And it aligns the cell that has

34:45 toward north or south, depending on side of the hemisphere of the

34:50 but it does direct them downward magnetic directs them downward to north or

34:57 So that is movement, uh, , there's a special movement associated with

35:02 called twitching. Ok. And we'll about that in a second. And

35:07 gas, right, we just talked and you can move your cell up

35:10 down the water column. So, all these could, you know,

35:13 some kind of movement. Ok. All right. So my besoms,

35:19 these, uh, so you see here in this, this is just

35:24 portion of the cell, OK. rod shape cell and um what they

35:33 ? Well, hey, they are . OK. But think of it

35:36 a compass to help orient it in environment. OK. So it's thought

35:42 and so the motion you see right, depending on what side of

35:45 equator they're on, on the southern hemisphere, they'll move towards that

35:51 and but downward, right, downward the pole. OK. So this

35:57 to if you recall aero tolerance, ? That phenomenon. So it's not

36:02 um these organisms are types that are micro aero files, um maybe border

36:10 obviate Aeros. And so they need oxygen. OK. And so usually

36:17 you go deeper in water, the content is less, not everywhere,

36:25 in all bodies of water because you , you have currents that may uh

36:30 may be occurring at certain times of year that carry oxygen rich water.

36:35 you know, generally speaking, you lower in the water column, you

36:37 less 02. OK? Because you turbulent up top, right? That's

36:42 oxygen mixes with water is on top then it goes down. But uh

36:47 by going to a, a depth here, OK. Somewhere here.

36:54 . You're gonna have, it'll reach optimal 02 levels. OK. So

36:59 kind of thought that's why this motion occurring with these, right? Get

37:02 to their proper depth of 02. ? For their metabolism. OK?

37:08 likely maybe they use oxygen but at levels, it's too toxic,

37:12 So you have to get them to right level. OK? Um

37:17 So it, it, it, is not, it's not a food

37:20 thing or an energy store, not all. It's all about orientations,

37:24 compass or south and going down. . Um Trim Pie Stock stocks.

37:34 not gonna say anything about what I before is um it's an extension,

37:40 types, it's not prevalent among a , but if you have it to

37:45 of help anchor it in place in nutrient rich environment, right? And

37:50 when the nutrients go away, then want to swim. So it,

37:54 revert to it from a stop to . OK. That's what those things

37:59 . So again, the types that , these aren't prevalent, but you

38:02 see a few species that have OK? But, and Pia

38:09 Phil and pi pi and OK, uh of course more, more

38:15 Uh And uh I think of that are more numerous, something like

38:21 What you see there in the picture the right. Those are those yellow

38:26 together or more numerous. Um Pilla specialized, they, they're fewer in

38:33 P I that is pil I and specialized functions typically. So like a

38:39 pilot you see there for conjugation or , you're gonna have specialized pillar for

38:47 , like twitching movement. We'll talk in a second. Um Even for

38:52 , recall transformation is of how bacteria um take in fragments of DNA from

39:00 environment and bring them inside. They , some can have specialized pill I

39:04 that purpose. So the point is pill I it's, you know,

39:08 functions here and there that cells can with it. OK. Um The

39:14 those are really for attachment, attaching a surface another cell. OK.

39:21 old ee Coli 0157 uh the Chipotle coli I call it intestinal pathogen,

39:29 borne pathogen. It has trim is of its vii factors because it needs

39:33 to stick to your cells in the wall to cause disease. And so

39:39 them, they, they can't. um so are all about attachment,

39:43 ? Pill, I can have different . I mean P I will,

39:48 know whether it's grabbing on to a fact when not by the cell or

39:52 to a surface for twitching motility or another cell for conjugation. No attachment

39:58 a part of that, but it has something else in addition to

40:02 either bringing something in moving, what you. OK? Um I

40:08 don't do that. They just kind stick to things, but they don't

40:12 the additional functions that a pill I have any time. Um All

40:18 So let's look at this. This kind of shows you the twitching

40:22 I think I equate this to like you had a um if you had

40:26 uh like moving a, a like rowboat, right? With two

40:30 right? And you're moving that boat land, right? And so the

40:35 are like hitting the ground and you're yourself that way. So the ores

40:42 pie, right? And you're moving body right? In that kind of

40:46 motion by attaching by those oars hitting surface, right? So it's all

40:50 the surface. All right. Twitching is all about the surface. So

40:54 can see here on the left might kind of follow. Um I don't

40:59 it there, let me do So here just for reference,

41:04 So the net, it's a net going that way. OK? From

41:10 to right. So you see where starts and where it ends up,

41:15 ? So what it's doing is and so the pill is made up

41:20 the same material that are made of , Pillin protein. Those are the

41:25 mono units, right? So it rapidly uh polymerize, add more units

41:33 it. And doing so makes it . That's what you see happening

41:38 OK. And so it extends and it attaches to the surface. All

41:42 , then it does the opposite, then depolymerize, right? It takes

41:49 off of it at, at the end and then by as a

41:54 it moves toward the attachment point, ? So it's kind of like

42:00 moves, attaches, moves. So what they call it twitching because it's

42:05 of like a herky jerky motion, attaching, then you're kind of

42:09 then you're attaching again. So it's smooth moving like a flagellum or

42:13 OK? But nonetheless, it's But uh the key is it's all

42:18 a surface. OK? Because that P I have to stick to

42:24 and it's sticking to a surface, ? This doesn't happen if you floating

42:28 , in aqueous medium, it's on surface. OK. Um Nano tubules

42:35 extensions of cytoplasmic material between cells. The of course, beginning to change

42:44 with your other members of the you can exchange all kinds of

42:48 right? Different types of molecules. uh proteins transcripts, et cetera,

42:54 ? Um As well as if you technically call this a way to transfer

43:00 , right? We're gonna learn about next unit, you know, uh

43:04 conjugation. Uh but technically, you transfer plasmas this way as well.

43:10 . So um the um and also occur between different species too. So

43:17 this is a phenomenon that's relatively like I was studying this stuff, this

43:22 known. So relatively a recent OK. Um OK. Any questions

43:30 this point? OK. Like I rattling these things off but I

43:34 literally this, you know, chapter stuff like when you or an intro

43:38 or the cell, right, all structures kind of the same thing

43:42 right? Structure function, structure right? So um um so movement

43:50 , we're using a flagellum singular, plural. Um So unlike Eion

44:00 if you recall, um EIC motion like with, with a flagellum is

44:07 of this undulating like a whip, ? It does this kind of

44:12 OK. Bacterial motion Procar motion is propeller. It's not this kind of

44:20 action, it's a, it's a structure. OK. Um And so

44:27 , let's talk about this for just a sec. So H antigen,

44:31 , we previously talked about the O , right? So Ogen is associated

44:37 the um ram negative ops layer. . This is associated with the

44:43 OK. Similarly, like with o produces an immune response. OK.

44:50 so long time ago, we developed as a way as a means for

44:58 . OK. So medically important strains have this are many times food borne

45:06 , your e coli, your et cetera. Ok. Um

45:12 right? The O is for the , but it also has an H

45:15 with it as well. Ok. uh it just, it,

45:19 again, it just, that's why see the term antigen, right?

45:23 it can generate an immune response. so we have antibodies to all the

45:27 H and O strains again for the of identifying. So, again,

45:32 is from medically important strains. So can wrap the idea. So there's

45:36 suspected 0157 outbreak, we can confirm pretty rapidly because we have the antibodies

45:43 it and, and to identify OK. Um Lar Morpho, I'm

45:48 gonna go into all the, the of these. OK. Uh But

45:52 what you see on the screen represents four types, uh 1234. So

45:57 can have some that have just a one in and rule a thumb.

46:01 notice that all the cells here are shaped with a couple of exceptions.

46:12 , bacteria that are motile are rat . There's a very few handful that

46:18 oxide that are motile. 99.999% are watching. OK. Um And so

46:28 , flip flagellar arrangement, you can a bunch, bunch of at one

46:32 , you'd have them all around the like this. Uh they can be

46:37 on each end. OK? These kind of more of the rarities this

46:41 here because when these move, only one of those can be

46:49 right? You can't have both uh kind of, they kind of cast

46:52 other out. So you have to one has to be moving and not

46:55 other. So kind of a Um any case you could if you

47:01 to use this as maybe a means identification, but it's it's not typically

47:06 . So I wouldn't worry about But you know, there are different

47:11 the uh OK. So the so this is obviously a gram

47:16 right? Has an outer membrane, ? And the inner membrane uh but

47:20 course, gram positive can be motile well. But the point here is

47:23 it's a rotating structure. So you the hook that rotates as you

47:30 OK. And it can rotate clockwise kind of clockwise and which way it

47:37 impacts how it moves OK. And forth is anchored in the membrane as

47:44 through the basal body. But the point here is it's rotating,

47:48 not doing, you carry out kind motion, it's rotating with a

47:52 OK. And of course, energy . OK. So, all

47:56 So the movement itself is um based the presence of attractants. OK.

48:07 what's gonna be an attractant? An is gonna be something that the cell

48:11 want to move towards because you can it. So nutrients, obvious

48:17 right? Uh various kinds of uh amino acids, you know,

48:24 types of nutrients can be attractive. . So that's what affects the

48:32 OK. So if you have uh versus clockwise rotations, so counterclockwise,

48:44 are promoted by the presence of OK. So you can see here

48:49 the front, you have receptors for attractions. OK? And so if

48:54 are present, if triangles are the , OK, they'll bind to the

49:02 and that will initiate counterclockwise rotation. . And so counterclockwise means a straight

49:10 . OK. And so that makes if it's encountering a attractant,

49:14 then we wanna run into it into of it, right? So we

49:19 use it. So that's what promotes counterclockwise rotation, a run.

49:26 Um So it basically becomes a balance a, a difference in frequency of

49:37 versus clockwise. OK. So rotations are favored when there is no

49:43 little, little or no presence of , right? Because now you're not

49:47 the binding to promote kind of clockwise . Instead, you, you're rotating

49:54 and that produces a tumble. So you can see how the flagellum

49:57 kind of all splayed out here, ? They're not, they're not working

50:01 music. OK. So, so it, it, it comes,

50:05 , what's the proportion of both OK. And that determines kind of

50:08 it goes from point A to point . OK. And so this is

50:15 example of kind of just a meandering they call random walk. OK?

50:22 so there's really no you shoot any to the movement here, right?

50:26 you have, you know, runs are here, right? Uh mixed

50:31 with tumbles. So the tumbles are the points, right? And so

50:36 kind of just spinning in place. so tumbles and then the straight lines

50:43 runs. So you have a mixture the two, OK? Mixture of

50:47 two. And so think of obviously, bacteria don't have a

50:52 but just kind of thinking in terms logic here. Um If there's,

50:56 a, if there's a lot of going on, basically, it,

51:00 tumbled, it kind of randomly shoots in a certain direction. OK.

51:05 so the idea is OK, maybe very randomly going in different directions it

51:11 encounter and attract them. OK? then if it does, then you

51:16 a more purposeful movement, right? like this. OK? Like

51:23 you'll still see the occasional um but obviously much less than you did

51:31 the left. OK? Because it's attraction and the more it encounters,

51:37 less tumbling, the more runs it because it's going toward increasing amount of

51:44 . OK. So you can see it's, it's uh like I,

51:47 guess I'll call that bluish green So it's a lighter bluish green

51:52 more intense here because it's a gradient . So it's heading toward that high

51:58 of the tractor, right? More . Ok. Um And does that

52:05 sense? Ok. Oh OK. questions about it? All right.

52:12 . So again, it's all influenced attractive, right? And going to

52:17 and the the proportion of counterclockwise or wise rotations? OK. Um

52:26 So here's our after, so we this before. Let's let me open

52:31 . Let's see. Yeah. Refer to my photo here. Mhm.

52:55 . No. Ok. The false false answer. Yeah. Right.

53:23 of ok. Count down from 54 . Ok. Ok. And let's

53:41 . 00, look at that went 67 0 87 to 2 45.

53:51 . Uh 2 40 E is the answer? Ok. So these are

53:58 not oh, compass, compass, ? Magnetic north going downwards.

54:11 Um All right. Let's see. , we, I think we have

54:14 one here. We didn't get to this last time. Uh So let's

54:21 this now. Ok, let me that. Ok. So we talked

54:26 these, some of these today, of these last time and we'll

54:36 Ok. Indoor voice. Ok. go through. Yeah. Oh,

55:15 ? Hm. Right. Ok. not, it's not f it's not

55:33 as in Frank. I can't, thank you for seeing the word.

55:41 . Ok, here we go. could think of that far but I

55:48 wanna say that one. Ok. G OK. So um so the

55:58 false answers are um B correct. false. And that b what's the

56:12 false one? E Yeah. So um that doesn't make sense because

56:19 nucleoid is not a organ, It's just a location, right?

56:25 , transcription translation um it's just, think of it as an organelle.

56:34 right. It's not a membrane bound . OK. Um OK. So

56:43 concludes chapter three. OK. So we go into four, it

56:49 you know, it's based on the we learned previously uh for the most

56:56 , right, a very large at least, right? Uh

56:59 right? So all that aerobic restoration you learn and fermentation and um et

57:09 . OK. Uh obviously fits here application for all that, right?

57:14 if we're going from, you keeping it basic here, one cell

57:21 lots of cells, OK? Um requires lots of energy, right?

57:28 so you need to supply that energy the form of different, the different

57:33 that make up your molecules, And so we already know that the

57:41 of metabolisms, procaryotes have, lit hydrogen atrophy and et cetera,

57:48 ? Aerobic aerobic respiration, fermentation. lots of different ways to grow

57:52 OK. And so the one thing remember is we can grow, of

57:59 , in the lab, fix them the lab and grow them in pure

58:04 and grow them to excess. Super huge numbers, right? Nothing

58:10 would ever occur in nature, It could occur in nature here and

58:15 , right, we talked about right? There's an example of where

58:18 can get a blow up in right? But all those things are

58:22 finite, only happen for a short of time before it reverts back to

58:26 of stabilizing and then everybody's kind of and you know, we're back to

58:31 and you know, growth is held check in many cases. OK?

58:35 nutrients are limiting out there in the , right? And so um in

58:40 , of course, you don't have restriction, right? You can control

58:43 and you can get super huge OK. So, um anybody,

58:49 , I know who here is um Jesus, what's it? The bio

58:58 biotech, biotechnology majors? Who's the ? OK. So you folks,

59:04 ? This is right in your right? Because you guys work with

59:07 reactors yet anybody or being supposed to , you'll be doing that.

59:13 you have, and you've grow, growing cells at the out the wazoo

59:19 of cells. Yeah. OK. liter. OK. Uh All the

59:25 controlled. OK. All right. , you get lots of growth in

59:32 , right? Yeah. Yeah. , um, so, you

59:37 that's, if you're biotech, you , one of the things you may

59:39 doing, I think you have probably bioinformatics as well. That's one way

59:42 can go, right? If you're bioinformatics, you'll be on the other

59:46 . So you'll be growing stuff and doing these kinds of things. So

59:51 so Cho nps, right? That's um those are the main elements that

59:58 up your molecules, right? All living thing, right? DNA RN

60:02 protein fats, carbs, right? obviously you want something to grow,

60:08 gotta supply that, right? So look at this question here.

60:13 This will be a, I predict correct. OK. I never get

60:23 bang it. OK. So for bacteria increasingly, well, not just

60:37 , you can actually be anything but most increasing amount of this will lead

60:43 an increase in yield. What would typically be? OK. OK.

61:00 , forget the, don't pay attention that. All right. Well,

61:07 answering the question. OK. The is about what nutrient would this likely

61:12 right? So respond to that. respond to the that. OK.

61:17 right. Let's count down for OK. OK. Yeah.

61:34 OK. So it is going to carbon carbon. OK? Because if

61:43 had the, because we're this, right, we are, this is

61:52 our molecules are made of, They're made of this framework of

61:58 then we add different elements to right? You can add nitrogen and

62:03 to it. You can make, things to make proteins and other elements

62:06 make and make opaque acids, It all begins with that,

62:12 That's how we call ourselves so called on this earth is carbon based life

62:18 , right? Because our molecules are that base structure that we then add

62:22 things to, to make the various . Ok. So by far you

62:28 to increase cell yield in your little dump in more carbon. Ok.

62:36 um you know, so carbon nitrogen is somewhat a distant distant

62:43 right? First carbon, then it takes a while pretty wild to

62:49 become nitrogen limited. You can you become carbon carbon limited way before

62:55 become nitrogen which um then after that can put sulfur phosphorus, iron,

63:02 sulfur in lower amounts is, of , is needed for a couple of

63:06 acids you use. But um certainly one, right? Nitrogen, more

63:12 more distant too. Ok. um essential nutrients. Well, those

63:18 things you can't make. All So you gotta supply them,

63:21 If you're growing up bacteria or whatever you need to supply things like

63:26 and, and nitrogen phosphorus and so . Ok? Um What's not an

63:32 nutrient? Something that, you for certain types, right? They

63:37 in their metabolism, right? Maybe deficient in a pathway and they can't

63:43 an amino acid you have to supply to, right? So, but

63:47 not the case for everything in the , right? It's only for certain

63:50 that can't do that. So, them, you may say it's

63:53 but for others it's not because they make it on their own.

63:57 But certainly your core, your core , carbon nitrogen. These things are

64:02 nutrients. You have to, you to supply them, right? You

64:04 to do that. OK? The micro nutrient difference just amounts,

64:11 So typically carbon nitrogen. So for add in, I call macro nutrients

64:21 grams per liter. OK? I micro, I call micro like

64:31 even Pegram per liter. So small quantity. OK? Um That's generally

64:36 minerals like phosphorus, maybe not phosphorous things like manganese cobalt, these kind

64:44 elements. Um So uh OK, talked about that. So I

64:51 you know, in the context of trophy, right? The form.

64:55 it's not only you gotta supply cho S and other things, what's the

65:01 ? What is the form of them supplying? OK. If you're not

65:06 actual c you're adding in a right? Is it co2 Autotroph?

65:11 it something more complex? Glucose, , et cetera? Right. So

65:17 your hetero trope. So just keep in mind. Um and even the

65:21 of nitrogen may matter, right? not as picky, but there are

65:25 types that can't use ammonia for So the point is, you

65:30 supplying the proper form, OK? And I think we, we know

65:34 these things are for, right? know, nitrogen fake acids. Um

65:39 , obviously and so forth. So I'm on the cat irons, I'd

65:45 iron is probably gonna be the, those types, the bigger, probably

65:50 most uh upper end in terms of of the, of those minerals I

65:56 them is iron. OK? There a lot of, a lot of

65:59 redox proteins and things, OK? micronutrients. So again, these are

66:06 in tiny mouths. And to be , you, you add, you

66:11 these types specifically to your medium, ? But the micronutrients, you really

66:20 because these can be um a just trace contaminants in the water that

66:25 use, right? So for any water is what you're suspending it in

66:30 it's solid medium or liquid water is base, right? And so the

66:35 itself will contain trace amounts of these , they typically from the pipes and

66:40 . So you don't typically add, these things uh unless you're doing some

66:45 of a growth study that determining, know what levels of these doesn't

66:49 but normally you don't, you don't those, you're just, you're just

66:51 the water, trace elements. Um Another one you, you sometimes

66:56 is w anybody remember what W is the periodic chart? Huston,

67:04 So that, that's uh some, of these are like co factors in

67:09 and different types. OK? Um . So the growth factors. So

67:16 , these are things you add in to your cho NPS. Ok.

67:25 Like very often like vitamins amino um things that typically may be deficient

67:33 the type you're growing that they can't it. You gotta supply it.

67:36 blood and serum are often constituents for for um pathogens. You're cultivating

67:46 oftentimes, blood and serum are You don't necessarily know what's in the

67:50 because blood and serum contain a lot stuff. Ok? And so,

67:54 know, just by adding it, helps grow it right? But you

67:57 go to the trouble of trying to out what's the constituent in the

68:00 You just know it works. So so you just use that, you

68:03 add it in, in uh very if it's a pathogen, you're you're

68:07 to grow. Um So these terms , proto or photo oxy, excuse

68:13 . So think of the proto in species you have like a protropin strain

68:20 like the representative of that group. has all the features you know

68:24 of that group. Ok. you may have variations, variants of

68:30 that lack this or that or may this or that. But um the

68:35 trope is one that is lacking, has a mutation. Typically, it

68:40 very often their amino acid pathway is up and they can't make the amino

68:46 . So you have to add it them. So an Oxytrol and very

68:50 it's in this kind of context, say oh a histadine Oxytrol, a

68:56 Oxytrol because it can't make that particular acid. So if you're gonna grow

69:01 right, you need to supply that acid, right? For, for

69:07 it's deficient in. Got um any , any questions? Yeah.

69:18 So pro from II I to me synonymous with each other. So while

69:23 is kind of the representative strain of group that has the features that represent

69:27 group. And so if, if have variations of the strain that are

69:31 deficient in certain pathways, then we that an Oxytrol. It's not the

69:37 type because it's lacking in some You got it really, that's a

69:43 cough point folks. So we'll see next week. Have a good

69:51 Happy be October be October when you

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