© Distribution of this video is restricted by its owner
00:03 | There we go and now we're now . Ok? Um Just a couple |
|
|
00:07 | things. I got a couple of going, hey, how you |
|
|
00:09 | Uh How are you doing? That's you uh say, hey, um |
|
|
00:12 | can't find the CASA link. I know how to log in or |
|
|
00:15 | you know, I'm using my old and they haven't updated my, my |
|
|
00:18 | yet. Everything for CASA is now canvas. So there should be a |
|
|
00:23 | on the left hand menu. Just Casa click that and that will take |
|
|
00:27 | to your sign ups for your classes . OK. So if you've been |
|
|
00:31 | the old Casa link and you've been problems getting to sign up for your |
|
|
00:36 | , that's why they just, that, that website no longer works |
|
|
00:40 | Today, what we're gonna do and just in case you don't |
|
|
00:43 | we have a test from Thursday, not Thursday, not Tuesday a week |
|
|
00:50 | this upcoming Thursday. So what we're do today, um We are going |
|
|
00:56 | be kind of trying to finish out little bit with the organelles of the |
|
|
01:01 | . We're going to be looking at translation first. And then we're going |
|
|
01:05 | kind of finish up with the And we're going to look at how |
|
|
01:07 | move back and forth across the membrane kind of how we should be finishing |
|
|
01:13 | looking at some of these mechanisms. today is a real physiology, heavy |
|
|
01:18 | . So a lot of this is , I've got to kind of grind |
|
|
01:20 | and think about what it is. actually looking at here what's what the |
|
|
01:25 | is actually doing. And so with , we're going to just kind of |
|
|
01:29 | where we left off. And, what we were trying to describe here |
|
|
01:32 | how do we make RNA, how we make M and the message that |
|
|
01:37 | used as the blueprint for the proteins we're going to be making. And |
|
|
01:42 | starting point here with that was what a gene and a gene simply is |
|
|
01:47 | strand of DNA. So it's part DNA. So you have 23 pairs |
|
|
01:52 | chromosomes amongst those 23 pairs of you have about 30,000 genes. And |
|
|
01:58 | you were to look at a gene say, let me see if I |
|
|
02:00 | identify it. The gene includes a point and then a whole bunch of |
|
|
02:05 | and then an ending point. But that, you're going to have these |
|
|
02:09 | that only for the gene or the that you're looking at and they |
|
|
02:14 | interrupting sequences and we call those exxons introns. And the intron is the |
|
|
02:19 | sequence. That's how I remember It's the one that starts with an |
|
|
02:22 | that you don't use. And for and years and years we thought it |
|
|
02:26 | junk DNA. It's not junk but we're not going to go into |
|
|
02:29 | we have introns. So you have portions that you're going to need and |
|
|
02:33 | that you don't need. And so little car tune that we were looking |
|
|
02:36 | here at the bottom kind of shows what a gene would be represented |
|
|
02:40 | And so you can see there's, these regions that are binding regions that |
|
|
02:44 | not going to worry about. But that arrow is, it's saying this |
|
|
02:47 | the reading frame. This is what gene starts at and then it reads |
|
|
02:52 | where through the green block, the blocks, the little triangle looking things |
|
|
02:56 | the way down to the stop sign thing. All those stop signs, |
|
|
03:00 | guess are eight sided, not But the idea is all that would |
|
|
03:04 | the gene. And then that stuff stuff that we don't need to make |
|
|
03:09 | MRN A. And so what has happen is even though we transcribe that |
|
|
03:14 | thing, we still have to Now, I'm going to go into |
|
|
03:17 | detail than you're going to need. right, you just need to know |
|
|
03:21 | process. But what I want, to understand is so this is kind |
|
|
03:24 | what you're looking at. You can here, here's my intron Exxon |
|
|
03:27 | Exxon, Enron, Exxon. And is not good enough. That's, |
|
|
03:31 | too much junk and not useful. so what's going to happen is is |
|
|
03:35 | there are mechanics, there's machinery inside cell, there's going to be modification |
|
|
03:41 | takes place. And so we're going get rid of the introns, we're |
|
|
03:45 | to protect the DNA by adding stuff it. And then depending upon that |
|
|
03:52 | and its need, you may see is referred to as alternate splicing. |
|
|
03:56 | what we used to think of as gene being encoding for a single |
|
|
04:00 | that's actually not true. It can alternate how splices that piece of gene |
|
|
04:06 | that gene to create different reading frames that you get unique proteins. And |
|
|
04:12 | what this is trying to show you like this one and that one and |
|
|
04:15 | one are alternate transcripts that you're now to be able to translate. All |
|
|
04:21 | . And when you translate it, going to give you a different |
|
|
04:23 | So you get a different protein from closely related but not the same |
|
|
04:29 | So there's some modification that takes And then once you get that, |
|
|
04:35 | you have a message that can then out into the cytoplasm and then use |
|
|
04:39 | machinery of the cell to make the . Now, you see in that |
|
|
04:45 | MRN A, that's what they were to create these new vaccines. It |
|
|
04:49 | an idea that came up about 20 ago and everyone was like, |
|
|
04:52 | it's not gonna work. It's too . And so we got to experiment |
|
|
04:56 | two years to see if they We'll see how it goes. All |
|
|
05:01 | , now, what we're looking at is kind of that big picture. |
|
|
05:06 | right. I want to make a , proteins are what the cell uses |
|
|
05:10 | do the work that it does. right, I took my gene, |
|
|
05:14 | transcribed it, make this RNA and I have to translate it. So |
|
|
05:18 | the second step. And so this going back to that whole central dogma |
|
|
05:24 | to RNA processing the RNA. Now going to take it out and we're |
|
|
05:27 | to read through that and we're going take that RNA code, which is |
|
|
05:30 | the code of nucleotides. And we're to take that code and turn it |
|
|
05:34 | the code of amino acids now to this, this is where we come |
|
|
05:40 | to those different types of RNAs. do I need in order to translate |
|
|
05:44 | ? Well, I need to have processed. M and that's the first |
|
|
05:49 | and all that is, is the of the gene that has been processed |
|
|
05:52 | that I can now read it. not taking the original, leaving the |
|
|
05:55 | back in the safe. I'm taking the blueprint for the contractor to go |
|
|
06:00 | say you make this, if you , I go make another copy. |
|
|
06:05 | second thing I'm gonna need, I'm need those amino acids. Those are |
|
|
06:08 | monomers that I use to make Then I'm gonna need Trnatrn A binds |
|
|
06:14 | . So here's your little Trnatrn A up a single amino acid and it |
|
|
06:19 | that amino acid to the site of synthesis. So T A system and |
|
|
06:27 | we have our RSO and our ribosome our reader. And what it does |
|
|
06:32 | it takes that message and it starts along the length of that message in |
|
|
06:37 | specific way and using that mess that sequence, it invites the tr |
|
|
06:42 | in to bring that amino acid and it takes the, a acid brought |
|
|
06:46 | and it adds it to an expanding . And so you can see that |
|
|
06:50 | , there's the growing chain and what doing is we're bringing them in and |
|
|
06:53 | going to make this chain longer and and longer. And that's protein synthesis |
|
|
06:56 | a nutshell. Now, it's far complex than this. So we're not |
|
|
07:00 | to go through all this step. I do want to just kind of |
|
|
07:02 | point out a couple of things. again, this is not a chart |
|
|
07:05 | you to memorize unless you take In which case, you get to |
|
|
07:09 | it and live with it, memorize . And you know, tattoo it |
|
|
07:11 | your body and all the other fun . All right, and all this |
|
|
07:15 | is basically says, look here is MRN Codon that results in a specific |
|
|
07:24 | acid. And so if you were read this, this would be the |
|
|
07:26 | codon up here as the second one the first base, second base, |
|
|
07:30 | base. And so each of those is the codon. And so you |
|
|
07:34 | just say I'm just going to use up here. If I had |
|
|
07:37 | then that would be pal alanine. so the trn A that has that |
|
|
07:42 | code on would carry phenylalanine or could uh you, you, you so |
|
|
07:47 | could calculate out what all 20 amino which codes provide for that. So |
|
|
07:53 | can read RN A and we can DNA, which would be a |
|
|
07:57 | So the triplet on the DNA is same thing as the code on for |
|
|
08:02 | RN A which would give you the acid for your protein. And so |
|
|
08:07 | one of the things that we learned do is that we, when we |
|
|
08:09 | that code, it was like, , now we figured out everything and |
|
|
08:12 | didn't figure out anything. All So you can kind of see |
|
|
08:16 | this would be the TRN A down at this loop. That's where that |
|
|
08:20 | is located. All right. And what it recognizes in the MRN A |
|
|
08:25 | and that's right there is the amino it's carrying right there at its tail |
|
|
08:30 | . And so this is kind of it would look like, right? |
|
|
08:33 | coming in on this side and you're your amino acid and you enter into |
|
|
08:38 | ribo zone at a specific spot. then what happens is in the middle |
|
|
08:42 | , that's where the extending protein is . And as you're reading along, |
|
|
08:46 | takes this long change and adds it the end of this one. And |
|
|
08:50 | the ribosome shifts over a frame and the trn A that's no longer bound |
|
|
08:54 | kicked out. And so what you're is you're basically going, here's the |
|
|
08:58 | acid add on shift over, kicked and just keep redoing that as long |
|
|
09:03 | that uh as long as you're reading MRN A and that's how you make |
|
|
09:07 | protein. And we do this like pictures we've already seen. So we've |
|
|
09:13 | this picture, right, which is over here? And we've seen this |
|
|
09:16 | and this is basically showing in the here is that extending protein as it's |
|
|
09:21 | along. And in this particular we're on the endoplasm reticulum, the |
|
|
09:25 | endoplasm reticulum, specifically there is a where we can insert that protein. |
|
|
09:31 | what it's going to do is it's to allow that thing to extend and |
|
|
09:34 | . And then now we have our that's inside the endoplasm curriculum, this |
|
|
09:39 | protein will be something that is secreted it's not attached or inserted into the |
|
|
09:45 | over here. This is done up the cytoplasm and you can see it's |
|
|
09:50 | just one, you don't just have and it reads along and you get |
|
|
09:52 | for one. MRN A because of , that modification we do at both |
|
|
09:58 | increases how long it sticks around and enhances its lifespan. And so you |
|
|
10:04 | have an RN A message that can read multiple times at the same |
|
|
10:10 | And then as long as you keep around, you can keep making copies |
|
|
10:13 | copies and copies of that protein until gets the RN A and it gets |
|
|
10:17 | and then you throw it away and start all over again. And that's |
|
|
10:19 | this is trying to show you is , here's that first ribosome with the |
|
|
10:23 | chain on it and then what you're to do is as it moves |
|
|
10:27 | then you add the next one and you add the next one and the |
|
|
10:29 | one. And so you end up these long chains and so one message |
|
|
10:32 | result in a massive amount of So you have this amplification. So |
|
|
10:38 | can see how important regulating this is you want to keep this around for |
|
|
10:43 | very, very short period of time you make too much protein if you |
|
|
10:46 | it around for too long. But process of translation is pretty straightforward. |
|
|
10:51 | you think all I gotta do is and then I'm making the amino acids |
|
|
10:55 | add on to it. Does that of make sense? And I'm changing |
|
|
11:00 | from one language RN a language to language amino acids, codons to amino |
|
|
11:08 | . You guys with me so All right. Now, the thing |
|
|
11:12 | with proteins, proteins are not just sequence, it's not just a bunch |
|
|
11:17 | amino acids in a row. Proteins shape. We talked about enzymes. |
|
|
11:21 | when we talked about enzymes and we enzymes can change their shape and stuff |
|
|
11:25 | that. Proteins have a very specific and that shape when it changes, |
|
|
11:31 | the activity of the protein. So have to make sure we have the |
|
|
11:34 | shape going into all this stuff for longest time. I know this is |
|
|
11:41 | because your computers don't really have But back in the day when we |
|
|
11:45 | had CRTS, the big old £300 screens, everyone had a screen |
|
|
11:52 | And there were two really cool screensavers could get, one was the steady |
|
|
11:56 | and one was the protein holding screensaver he's looking for extraterrestrial life. So |
|
|
12:00 | all the radio signals and they figured these aisle computers, what we'll do |
|
|
12:04 | we'll just make little cute little lines we'll try to process all the signals |
|
|
12:08 | we're getting in a sourcing manner. I was like, oh, that's |
|
|
12:11 | of cool. Never found an All right. The other one was |
|
|
12:15 | protein folding one because you should be to predict the shape of a protein |
|
|
12:21 | upon a whole bunch of chemical and properties. But you can't, but |
|
|
12:25 | takes a lot of computer power to that. All right. Now, |
|
|
12:29 | some reason, cells can just fold . It's really kind of cool while |
|
|
12:34 | being made. And part of the that they do that is because they |
|
|
12:37 | these chaperone proteins that come along and that molecule fold appropriately while you're building |
|
|
12:46 | . Now, I just think of as voodoo. I mean, it |
|
|
12:50 | beyond my kin that we have a or a couple of proteins that can |
|
|
12:56 | every protein in your body fold the way. And this is the gist |
|
|
13:04 | it. You have these heat shock . You don't need to know their |
|
|
13:09 | . I'm not going to ask you a heat shock protein. But you |
|
|
13:11 | these heat shock proteins that come along bind to it and help kind of |
|
|
13:15 | it. But then you have these that literally look like martini shakers. |
|
|
13:23 | then you take that protein and the shock protein and you put them in |
|
|
13:26 | Martini shaker and then you shake it then you open the top and out |
|
|
13:31 | the properly folded protein. You think making stuff up dead serious. That's |
|
|
13:39 | how it works. So, it's I said, for me, it's |
|
|
13:43 | voodoo, someone knows how it's actually on here, but that's in essence |
|
|
13:47 | going on. All right. So protein is folded correctly so that it |
|
|
13:54 | then function proteins that are not folded , don't function correctly and cause |
|
|
14:00 | And so the cell does not like . So it'll either destroy it or |
|
|
14:05 | it will do is if it's disguised , it will keep working in your |
|
|
14:11 | and then muck up stuff. So don't like improperly folded proteins. |
|
|
14:20 | in understanding a protein and what it , there's four levels of organization for |
|
|
14:26 | protein. All right, what we the primary, the secondary, the |
|
|
14:31 | and the quinary structure. If you've biology, you've probably heard these at |
|
|
14:35 | point in your life, these are particularly difficult, but we need to |
|
|
14:39 | of understand this because in order to shape and how proteins interact, we |
|
|
14:43 | to understand that shape comes from The first thing that the lowest level |
|
|
14:49 | organization is simply the amino acid What is the sequence of this |
|
|
14:53 | It always starts with the methionine because always the starting codon is a |
|
|
14:59 | So when you see that a UG encodes math. So that's always the |
|
|
15:03 | one that goes on in its, its life and you read the amino |
|
|
15:06 | and sequence. All right. So just like reading a word that's referred |
|
|
15:11 | as the primary structure. But because all those side chains, we |
|
|
15:18 | we said we're not gonna bother memorizing . All he said, look, |
|
|
15:21 | these side chains, some charged, are negatively charged, some are attracted |
|
|
15:26 | water are opposed or rejected by hydrophobic, lipid or hydrophobic and lip |
|
|
15:34 | hydrophilic lipophilic. All right, we all these side chains and what they |
|
|
15:39 | is they interact with each other in surrounding environment. So that helps twist |
|
|
15:43 | bend this sequence as it's being So part of that sequence comes from |
|
|
15:50 | . And so what we're going to and we're going to get some some |
|
|
15:54 | that kind of pop out because of nature of the sequence of that primary |
|
|
15:58 | . So the secondary structure is a of or a derivative of the primary |
|
|
16:07 | . Now here, what we're doing we're starting to get some two or |
|
|
16:11 | dimensional shape. There's two particular types secondary structure that we see are repeated |
|
|
16:19 | times in proteins that they're interactive in . So the first type I think |
|
|
16:25 | have another slide here. Yeah. first type is is what is referred |
|
|
16:29 | as an alpha helix. And so can see in our little picture |
|
|
16:31 | all the little squirrely or swirly things just a function of the sequence, |
|
|
16:37 | causes it to bend and bend and and it just kind of bends on |
|
|
16:40 | until it creates this kind of coil helix. The second one is the |
|
|
16:44 | sheet, it's more flat. And you can see these little arrow things |
|
|
16:47 | here on the sides, those represent sheets. And here what you do |
|
|
16:51 | you can see the sequence comes up you have a sharp bin that just |
|
|
16:54 | it to go the same way. then there's interactions between the side chains |
|
|
16:58 | kind of hold things together. So end up with these flat areas inside |
|
|
17:02 | protein. And again, our pictures don't do a really good job of |
|
|
17:06 | it. But I don't think these models help you really kind of see |
|
|
17:11 | what that is. But if you're in biochemistry, they do a lot |
|
|
17:15 | this stuff and they talk about what parts do and how they interact. |
|
|
17:21 | that's why these are important is because this shape. You now have a |
|
|
17:26 | type of interaction that can take All right, you create surfaces or |
|
|
17:31 | create interaction point here. Now this three dimensional. And if I take |
|
|
17:39 | whole bunch of three dimensional shapes, still get a larger three dimensional |
|
|
17:43 | right? So if I think of piece of paper, a piece of |
|
|
17:47 | is flat, right? But is in three dimensions, you have a |
|
|
17:52 | ax and a long Y. But also have a very thin Z. |
|
|
17:55 | if I take that piece of paper then I crumple it up. I |
|
|
17:59 | have three dimensional shape. It's just different. So if I take a |
|
|
18:03 | bunch of secondary structure together with other structures, I get tertiary structure. |
|
|
18:11 | , I should be here. Uh terrible. I'm gonna, I'm gonna |
|
|
18:16 | to this picture because it's a little easier to see it. So basically |
|
|
18:19 | it's saying is if I get a bunch of this, I get a |
|
|
18:22 | bunch of that. So that would the tertiary structure of a protein. |
|
|
18:27 | would be the tertiary structure. It's the sum of its parts. All |
|
|
18:32 | . So why use this picture? have no idea but that shape is |
|
|
18:38 | and held in position because of the bonds that we're ignoring for this |
|
|
18:44 | And I just kind of listed them . I'm not gonna ask you what |
|
|
18:47 | bonds are, how they work. you're taking this class at HCC, |
|
|
18:52 | need to know them. You'd have whole electron chemistry. All right. |
|
|
18:56 | don't think it's particularly important that, know, the types of bonds that |
|
|
19:00 | . All right. But the idea , is that the shape is held |
|
|
19:03 | place because bonds, a protein hydrophobic or side chains get pushed inward and |
|
|
19:15 | they're attracted to each other through kinds like things like hydrogen bonds. All |
|
|
19:21 | . And then hydrophilic, the things love water pointed outward. Now, |
|
|
19:25 | have something to interact with. And tertiary structure now has a functional shape |
|
|
19:31 | it can then use to interact with molecules in the cell so far. |
|
|
19:40 | . So primary is the amino acid . Secondary are the small twists and |
|
|
19:45 | or the flat plates, these beta or beta beta plated sheets or the |
|
|
19:50 | helix that give rise to unique regions that protein. And then the tertiary |
|
|
19:57 | is the whole shape of the And then if you get a whole |
|
|
20:01 | of proteins that interact and stay what you now have is what is |
|
|
20:04 | quinary structure. All right. So picture is the one you usually see |
|
|
20:09 | they throw this out there. When talk about quinary structure, they're |
|
|
20:12 | hey, here's an example of quinary . Here's hemoglobin, hemoglobin is what |
|
|
20:18 | oxygen in the blood, specifically in blood cells, not in circulation. |
|
|
20:24 | so what you have here is you one protein, two proteins, three |
|
|
20:28 | , four proteins, and all those proteins are held together as a single |
|
|
20:37 | . That would be an example of structure collagen. The thing that makes |
|
|
20:40 | your skin, right thing that tight you're young but gets loose when you're |
|
|
20:47 | , that collagen has quinary structure. basically three collagen chains that are wrapped |
|
|
20:52 | a rope and then over time that gets looser and looser and looser. |
|
|
20:57 | that's all throughout your skin. This the easy one to see, looking |
|
|
21:01 | a rope is not a lot less . All right. And again, |
|
|
21:06 | may have other things that are associated it. What we refer to as |
|
|
21:09 | prosthetic. So think about someone who's a limb, right? We add |
|
|
21:14 | artificial limb to it. We call a prosthetic. Right. Now, |
|
|
21:19 | do we call them prosthetic because they're proin us in nature? All |
|
|
21:23 | So here these little hem units, things that actually bind up the oxygen |
|
|
21:28 | pigment molecules. They're not amino acid , they're very, very different in |
|
|
21:36 | , but associated with the globin. that you can have this oxygen carrying |
|
|
21:43 | , which is four proteins and four held in place. That's just an |
|
|
21:49 | . You're not gonna sit there diagram explain hemoglobin. All right. So |
|
|
21:56 | organization makes sense, right? It's think about a paragraph. What is |
|
|
22:02 | paragraph is a bunch of sentences, are sentences, a bunch of words |
|
|
22:07 | what are words, bunch of letters it's the same thing, right? |
|
|
22:13 | bunch of letters, secondary structure. those are your words, put your |
|
|
22:17 | together, you get sentences. That's structure, put your sentence together, |
|
|
22:21 | got a paragraph. OK. That's neat way to kind of think about |
|
|
22:25 | . It's, it's what is referred as an emergent property. All |
|
|
22:29 | So if you ever hear that just think as I put things |
|
|
22:33 | new things show up. All So we're kind of backtracking a little |
|
|
22:42 | here. So these are structures you've learned about. So you can see |
|
|
22:45 | is our nucleus next to the nucleus the, it even says up there |
|
|
22:52 | the new plasma curriculum, right from endoplasm partum, we go out to |
|
|
22:57 | LG and then we might have vesicles lysosomes and then ultimately, we give |
|
|
23:01 | out here to the plasma membrane. we said when we started talking about |
|
|
23:07 | , that at the level of the , it's double membrane. And that |
|
|
23:11 | we're doing is we're building membrane that added to the endoplasm reticulum gets pinched |
|
|
23:16 | , sent off to the golgi joins with the golgi and then things get |
|
|
23:21 | off form those vesicles and those lysosomes then vesicles will then move up and |
|
|
23:26 | join up with the plasma membrane. so they, they are served as |
|
|
23:31 | structure collectively, they're separate because they're by this, the transport, moving |
|
|
23:40 | along the way ultimately to the plasma . All right. And we call |
|
|
23:45 | the endo membrane system. All Endo being inside membrane referring to these |
|
|
23:50 | lipid bilayer. All right. all those structures that we've mentioned and |
|
|
23:57 | been talking about serve as part of in the membrane system. All |
|
|
24:02 | generally speaking, when we look at as a function, what is the |
|
|
24:05 | of these things? They play a in metabolism and transport. I'm making |
|
|
24:09 | , I'm processing things and then when have vesicles, I'm transporting them. |
|
|
24:13 | when we talk about protein synthesis, taking place here in the endoplasm partum |
|
|
24:18 | here up in the golgi. When talking about transport, we're talking about |
|
|
24:22 | vescus with movement of lipids. We're about smooth endoplasm reticulum, right? |
|
|
24:27 | detoxification, smooth endoplasm reticulum. So membrane system is more of a collective |
|
|
24:34 | to look at these particular structures in of a whole function from beginning to |
|
|
24:41 | . So when we looked at this said, what does the the in |
|
|
24:45 | do? We're looking at just a process within the larger process of secreting |
|
|
24:52 | protein. Now, when I was your seat and someone explained all this |
|
|
25:00 | to me, it was like, , well, we have these vesicles |
|
|
25:04 | and what do the vesicles do pop the? And then it's like they |
|
|
25:07 | float around inside the cell and they slowly make their way. And I |
|
|
25:12 | like, ok, that sounds There's no rhyme or reason to |
|
|
25:15 | things just go where it goes. in cells just like everywhere else in |
|
|
25:22 | , everything has purpose, everything is directed or driven in a particular |
|
|
25:28 | And we talked about the cytoskeleton. one of the things we said about |
|
|
25:34 | is that they serve as highways to things around the cell. So one |
|
|
25:40 | the things that we use is we motor proteins to bind up to different |
|
|
25:46 | , including vesicles to move them to they need to go, which is |
|
|
25:51 | of cool. All right, which tells you that nothing is done inside |
|
|
25:55 | cell without purpose, which is also of cool because that kind of supports |
|
|
26:01 | notion or an idea that cells are wasteful. They don't waste energy doing |
|
|
26:06 | things, they're directed. All And so these proteins are going to |
|
|
26:14 | attached to these microtubules and they have region that can bind up to whatever |
|
|
26:19 | supposed to carry and then they move things in a particular direction. Now |
|
|
26:24 | always requires energy. So these are ATP dependent. I think I'm going |
|
|
26:28 | have a video posted on canvas or least a link to it so that |
|
|
26:32 | guys can see this and what's going , you know, but honestly, |
|
|
26:36 | , if the Disney company wasn't responsible creating these things, I mean, |
|
|
26:40 | , if, if you saw you're like, this is a Disney |
|
|
26:44 | . It has to be because they like cartoon characters. You got these |
|
|
26:48 | old floppy feet and they look like and they have something that they attach |
|
|
26:53 | their heads and then they walk around this hearing stuff. It's wild. |
|
|
27:03 | this is how we get things to they need to go when that vesicle |
|
|
27:10 | to the membrane, it doesn't immediately attach to itself and then empty |
|
|
27:15 | In fact, it's directed specifically to area where it docks and it sits |
|
|
27:21 | waiting for a signal to merge with . Now, the molecules that allow |
|
|
27:26 | to dock are called snare proteins right , again, this is probably |
|
|
27:32 | there's far more complex than we're going go into. But what I want |
|
|
27:34 | point out here in a, in very simple way is that this is |
|
|
27:39 | , not a random thing. So I'm secreting something, I'm sending it |
|
|
27:43 | the secreting side of the cell and bests is going specifically to a location |
|
|
27:48 | it can bind up and then wait be cold. So, on the |
|
|
27:53 | of my vesicle, I have they call them V snares because they're |
|
|
27:58 | of the vesicle and then they recognize group of proteins on the plasma membrane |
|
|
28:04 | the inside called T snares. That's target snare. So V snares plus |
|
|
28:09 | snares, they come together and then wrap up and they're like, all |
|
|
28:13 | , we are now attached, but what it does is it doesn't open |
|
|
28:19 | , it's just closely affiliated or closely . But when the right signal comes |
|
|
28:24 | , usually some sort of calcium we don't need to understand that just |
|
|
28:27 | . When we get to muscles, go see, see, it's right |
|
|
28:30 | . All right. But the idea that that signal comes along and that |
|
|
28:34 | the vesicle to open up. And the two membranes merge together and that |
|
|
28:38 | then just joins up with the plasma and the material that was inside gets |
|
|
28:42 | out into the external environment. If a protein that is inserted into this |
|
|
28:50 | , I'd be inserted in this direction that my outside, the portion I |
|
|
28:54 | face outside would be where this stuff , right? So I'd be pointing |
|
|
28:59 | and then when I open up that would go like, like, |
|
|
29:03 | so it's like this and then I open up so that I'd be pointing |
|
|
29:07 | the right direction. If this was outside, I can't make my hands |
|
|
29:10 | the other direction, right? So my finger were pointing inwards to see |
|
|
29:15 | when I open up to the it's still pointing outside. All |
|
|
29:21 | So that's how we insert proteins into membrane so that now I can interact |
|
|
29:26 | my environment. So that's what snare do. And this is just a |
|
|
29:31 | . So you can see how it's done. It even shows the calcium |
|
|
29:34 | here. But again, this is something for you to memorize if you're |
|
|
29:37 | in seeing it in detail, this a picture for you to look |
|
|
29:40 | OK. So here we are at Golgi. So we're still part of |
|
|
29:47 | membrane system here. I'm pinching off vesicle. And the question we're saying |
|
|
29:52 | , hey, what can a vesicle ? All right. Well, one |
|
|
29:56 | that I can do is I can materials to the surface, right? |
|
|
30:01 | that's what this is trying to show , right? And so if I |
|
|
30:05 | a material that is being secreted, going to be inside and then I |
|
|
30:09 | join up to the surface. And just as we just demonstrated, I |
|
|
30:12 | release those materials. The second one if I'm a peptide that is supposed |
|
|
30:17 | be implanted, you can see here is the part that's supposed to be |
|
|
30:20 | outward. When I join up, pointing in the right direction. So |
|
|
30:23 | try to demonstrate that to you. third thing that I can do is |
|
|
30:26 | I have enzymes, I will be aside as a lysosome, I concentrate |
|
|
30:31 | enzymes, concentrate protons in there to it really, really locate. And |
|
|
30:37 | now I can wait for a endos come along. Merge with that. |
|
|
30:41 | when I merge with that endo I then digest whatever is inside that endo |
|
|
30:47 | I'm just throwing this slide up here remind you. So you don't have |
|
|
30:49 | go flipping back. Saying, remember looked at this already here is that |
|
|
30:54 | Zoe it's being formed in here is lysosome. And what they're doing is |
|
|
30:59 | bringing them together. So like damaged organelle, something else I've pinched |
|
|
31:05 | each of these, I bring them and whatever is in one of those |
|
|
31:10 | , lysosome destroys because of the concentration those enzymes is the only place that |
|
|
31:20 | have proteins and other things that need be stored at. They only found |
|
|
31:24 | endos. Do you have proteins in cytoplasm? Do you think they can |
|
|
31:29 | bad? Yeah. Do we have have a way to get rid of |
|
|
31:33 | ? Yeah. So we have This is the garbage disposal of the |
|
|
31:38 | . If lysosome is the stomach of cell, here's the garbage disposal. |
|
|
31:42 | happens is pro pro uh proteins in cell. Um When they're doing their |
|
|
31:48 | , everything is going great. You , everything's fine. But when they |
|
|
31:50 | malfunctioning, there are machinery inside the that recognizes things that are going |
|
|
31:56 | And what they do is they tag , right? They kind of go |
|
|
31:59 | and it's like, oh this is . It's like right before you do |
|
|
32:02 | garage. So you're going through the and you're like, yeah, this |
|
|
32:04 | in that box, this goes in box. Same thing. It's like |
|
|
32:06 | come along and we tag it, protein or the molecule we use to |
|
|
32:10 | these things are called ubiquitin. The name for a protein. You |
|
|
32:15 | do you know what ubiquitous means Right. On campus, students are |
|
|
32:25 | . There. You have a vocabulary for the day. All right. |
|
|
32:28 | you don't need a calendar and just me, I'll give you a big |
|
|
32:31 | , right? So Ubiquitin is named it's everywhere Great. Thank you for |
|
|
32:38 | help professor. Right? I this is, this is what biologists |
|
|
32:41 | . We name things for what they or for what they look like. |
|
|
32:43 | like, well, we find this to there's stuff everywhere. So we're |
|
|
32:45 | gonna name a ubiquitin. Great. you. Very unhelpful tells you nothing |
|
|
32:49 | it does, right? But what does is we take ubiquitin and we |
|
|
32:55 | proteins that need to be destroyed. then that is a signal for something |
|
|
32:59 | to come along and grab it and , hey, you get to go |
|
|
33:01 | the proteome and the proteome grabs it then grinds it down into a bunch |
|
|
33:05 | amino acids. And what can you with those amino acids? You can |
|
|
33:08 | them and you can use them to new proteins and life goes on. |
|
|
33:14 | if everyone accuse you of not being because you fail to recycle, you |
|
|
33:17 | that trash can you just throw that cup in it? No, |
|
|
33:21 | no, no, no, I'm stuff all day long amino acids, |
|
|
33:26 | example. Yes, ma'am. And . And this all right. That's |
|
|
33:33 | good question because like wait a you told me lyses break things down |
|
|
33:38 | they do. But we the way of works. Remember it's a vesicle |
|
|
33:43 | the materials in it. So you to bring something is another vesicle with |
|
|
33:48 | in it to it. So let go back a slide. So we |
|
|
33:51 | see this again using this as an . All right. So what this |
|
|
33:55 | is trying to show you is here an endo zone being formed with like |
|
|
34:01 | bacteria in it here. This is you an organelle. So let's say |
|
|
34:07 | a mitochondria has gone bad or over it's like, oh well, here's |
|
|
34:13 | that I'm just bringing in. That's a big Ovega zom, right? |
|
|
34:18 | oh, I don't know, proteins the cell is picking up through uh |
|
|
34:23 | sort of binding mechanism. That's what was trying to show you is |
|
|
34:25 | see there's a receptor and the little things are the things I'm binding |
|
|
34:28 | But in each of these cases, forming a vesicle of the, of |
|
|
34:33 | material. And then what am I do is I'm gonna take that vesicle |
|
|
34:37 | merge it with the lysosome. what I'm doing is I'm merging two |
|
|
34:41 | together with the proteome. There is vesicle, what we're doing is we're |
|
|
34:47 | out here in the blue. if I have a protein that's gone |
|
|
34:51 | , then that proteome is going to delivered or it's gonna be given that |
|
|
34:57 | protein. There is no vesicle It's a very good question. |
|
|
35:11 | protein. Um That's probably another way can think about it again though. |
|
|
35:16 | , the primary difference here is functionally with the vesicle. So proteome by |
|
|
35:21 | nature, you can look at its prote. So it's basically saying I'm |
|
|
35:26 | proteins, it doesn't destroy DNA. have other enzymes that do that in |
|
|
35:31 | location where you'd find DNA. We enzymes that are responsible for breaking down |
|
|
35:36 | . All right. And again, would be not a proteome. Those |
|
|
35:39 | be RN A. All right. inside a, a lysosome, you |
|
|
35:45 | have enzymes that break down whatever happens be inside that vesical. So for |
|
|
35:51 | , if you're looking at a what is that bacterium gonna have in |
|
|
35:55 | ? It will have proteins, easy, but it will also have |
|
|
36:00 | acids, right? Because bacteria have material, it will also have lipids |
|
|
36:06 | it has a plasma membrane. So gonna have to have something that deals |
|
|
36:09 | all of that stuff. And so regard to the lysosome, yes, |
|
|
36:12 | going to have to have enzymes that responsible for breaking all that material |
|
|
36:16 | So that is a good way to about it. But again, a |
|
|
36:21 | difference there lysosome is a vesicular The things that is destroying are in |
|
|
36:27 | as well. Yes. Mhm So don't know enough about Autopay to know |
|
|
36:42 | that's true or not. Um So became this really, really exciting mechanism |
|
|
36:49 | they learned that this is how cells with large organelle damage, right? |
|
|
36:56 | so it became this like, maybe this is the way to if |
|
|
36:58 | can, if we can somehow understand mechanism, we can use it as |
|
|
37:02 | way to deal with cancer. So why it became a really hot topic |
|
|
37:05 | everyone started exploring it. Unfortunately, , I'm, I was long past |
|
|
37:11 | interest in that area to really kind pay attention and I did have worked |
|
|
37:15 | it. But again, it was terms of cancer, I don't |
|
|
37:18 | in terms of like, all if you're depriving yourself, if you've |
|
|
37:21 | through all your fats, is this you start breaking down your muscle? |
|
|
37:26 | that is. So this, this is if you are in a state |
|
|
37:30 | starvation and presuming you're having water put your body, right, then your |
|
|
37:35 | will first burn through all your protein first burn through all your fat and |
|
|
37:39 | it will start breaking down proteins. is it this mechanism? I don't |
|
|
37:42 | , it's likely that it is, I don't know for certain. |
|
|
37:46 | totally useless, aren't I? you can nod your head and say |
|
|
37:52 | before we move on. All So this is a really good |
|
|
38:01 | Well, I mean, that is great place for good questions and those |
|
|
38:04 | good questions. Um What we're gonna is we're gonna shift gears. |
|
|
38:08 | we're going to start dealing with this of all right. Remember that we |
|
|
38:12 | we're going to kind of go into physiology. I need to move something |
|
|
38:16 | the cell, whether it's through the or through some part. So how |
|
|
38:20 | I go about doing that? And we're going to be looking at these |
|
|
38:23 | types of mechanisms. All right. , the first thing we need to |
|
|
38:28 | is, is a very simple definition what is diffusion. All right. |
|
|
38:32 | that first bullet point up there is definition, it's the tendency of molecules |
|
|
38:37 | spread out evenly into their environment so there is basically an equilibrium or an |
|
|
38:44 | distribution between them. All right. that's, that's ultimately what diffusion |
|
|
38:50 | All right. It is dependent upon things. 22 basic things. It's |
|
|
38:55 | concentrated are those? All right. in other words, if we have |
|
|
39:00 | over here, but none over we would expect diffusion to occur rather |
|
|
39:05 | . All right. And the reason is that all the molecules have some |
|
|
39:08 | of degree of energy in them. when you put them all close |
|
|
39:11 | that energy is them bumping into each and they start colliding. And so |
|
|
39:15 | start spreading out until they ultimately spread to the point where they're colliding with |
|
|
39:19 | other at the same rate because of diffusion or that, that distribution. |
|
|
39:26 | this the steeper that slope the faster rate of diffusion. So if they're |
|
|
39:32 | already evenly distributed, they're not going run into each other with a high |
|
|
39:35 | of frequency. It's going to be similar degree of frequency as they would |
|
|
39:39 | they were all evenly spread out. right. Now, if you can't |
|
|
39:43 | this, we call it the the steepness of the gradient. Think |
|
|
39:47 | being in Houston and, and getting a skateboard right where it's flat. |
|
|
39:52 | you move when you get on a surface on a skateboard? No, |
|
|
39:58 | stand on it. All right. , let's go ahead and increase the |
|
|
40:02 | a little bit. Let's say you're a very low slope and you stand |
|
|
40:07 | the skateboard on the top. Are gonna start moving? Yeah. |
|
|
40:11 | What if you go into a space has the steepness of this room and |
|
|
40:15 | get to the top and you get a skateboard. Would you go faster |
|
|
40:18 | with, you have a shallow Yeah. All right. And then |
|
|
40:21 | just go ahead and crank that all way up to almost 90 degrees. |
|
|
40:25 | do you think even faster? So the steepness of the slope |
|
|
40:31 | In other words, the more concentrated am in one area and the less |
|
|
40:34 | the other area, the faster I'm to diffuse the second form or the |
|
|
40:38 | thing that matters is the degree of . Temperature is kinetic energy. That's |
|
|
40:45 | it reflects. It's how much energy putting the system. You guys know |
|
|
40:48 | sweet tea is, you know how make it. No. All |
|
|
40:53 | This is an important thing. You live in the south right now. |
|
|
40:56 | tea is what we drink down All right. I know some people |
|
|
41:01 | spot because you're like, my grandma sweet tea, right? Or my |
|
|
41:03 | makes sweet tea. You gotta know you're an adult. Now. You |
|
|
41:06 | to know how to make sweet It's real simple. You boil tea |
|
|
41:09 | and then while the water is still , you put in the sugar directly |
|
|
41:13 | what does the sugar do? It ? It dissolves right in if I |
|
|
41:17 | to a restaurant and order an nice and then I put the sugar |
|
|
41:20 | where does the sugar go right down the bottom? And it sits |
|
|
41:24 | this gooey mess. So what do have to do? Mix it? |
|
|
41:28 | have to stir it. All But we're scientists here, we're not |
|
|
41:30 | it. We're providing kinetic energy. right, we're basically forcing the |
|
|
41:37 | And so because they're spreading out, dissolving, they're moving away from each |
|
|
41:42 | . And that's what that diffusion All right. So, you |
|
|
41:45 | if you ever get lost, just of the sweet tea example. |
|
|
41:49 | there's already heat in the system. put it in the sugar, the |
|
|
41:52 | just diffuses very, very quickly. right. So this is, this |
|
|
41:57 | what we're kill your body do. trying to spread out as best they |
|
|
42:03 | in with that throughout your entire body the fact that we apartments in |
|
|
42:08 | All right. And so there are ways that these, these particles can |
|
|
42:13 | move using simple or not simple But using this definition of diffusion, |
|
|
42:19 | I'm always trying to move down my gradient, if if nothing is impeding |
|
|
42:24 | , I can move just fine. right. So that would be an |
|
|
42:28 | of simple diffusion, right? So diffusion, you don't need any |
|
|
42:33 | Even if there is a membrane that membrane is not serving as a |
|
|
42:37 | . It's not even as far as concerned. If that barrier is permeable |
|
|
42:42 | you or you're permeable through that then you'll just diffuse just fine. |
|
|
42:47 | would be simple diffusion. All So it's only dependent upon the concentration |
|
|
42:53 | . It's not a regulated process. going to see different types of this |
|
|
42:58 | just a moment. Now, most the molecules in your body are ionic |
|
|
43:03 | some way, shape or form. other words, it carries some sort |
|
|
43:05 | charge to them, right? Or other thing is that they are either |
|
|
43:11 | or lipophilic, meaning they love the or they hate the water. All |
|
|
43:16 | . And so if you love the and hate fat because you can't love |
|
|
43:21 | . You're, you're one or the , you can't pass through a |
|
|
43:25 | All right, that membrane is no permeable to you. So you some |
|
|
43:30 | of help to get past that right? So that help means you're |
|
|
43:37 | the movement of that molecule. That's the help is. So we have |
|
|
43:41 | is called facilitated diffusion cell diffusion I can go wherever I want to |
|
|
43:47 | what is the concentration gradient. I'm to move from the area of high |
|
|
43:50 | area of low concentration facilitated diffusion. still dealing with that high to |
|
|
43:56 | but I can't cross that barrier to to the low. So I need |
|
|
43:59 | help me along the way. That's these represent. All right. So |
|
|
44:04 | can have channels or we can have . A channel is simply a structure |
|
|
44:12 | creates a hole through the barrier. right, that's what this is showing |
|
|
44:17 | . It's literally a water filled So that if I'm a water loving |
|
|
44:22 | , I can just pass on through hole pretty simple. All right, |
|
|
44:28 | channel could be something that has a to it, it can open and |
|
|
44:34 | . But generally speaking, we're talking the gate is open, it allows |
|
|
44:38 | the free flowing of materials between the spaces. A carrier. On the |
|
|
44:43 | hand, literally has to bind, bound up by the thing that needs |
|
|
44:48 | be moving. All right, it's open to both sides. At the |
|
|
44:52 | time, it's open in one And then when it binds up the |
|
|
44:56 | that it needs to move, then causes that protein to change its shape |
|
|
45:01 | open up the other direction. And it changes its shape, it is |
|
|
45:04 | longer capable of binding the thing that carrying. So it pops out and |
|
|
45:07 | , it goes all right. So are some of the basic kinds of |
|
|
45:13 | from which we get all these other complex types of movement. All |
|
|
45:19 | So for example, this doorway over is an example of a channel, |
|
|
45:25 | this channel open or closed, But if I were to take those |
|
|
45:30 | and prop them open, anything that pass through the door is going to |
|
|
45:34 | through the door, students, dogs but not trucks, too small |
|
|
45:41 | trucks. Ok. Carrier, a is more like um have you ever |
|
|
45:49 | in those types of doors like at or at airports, the rotating |
|
|
45:54 | right? You have to kind of walk up to it and it's like |
|
|
45:58 | your timing right? And you like in and now it's like right then |
|
|
46:05 | go to the other side and you out through the other side. |
|
|
46:07 | that's more like what a carrier Notice it's only open one side at |
|
|
46:10 | time. Ok. Now a type facilitated diffusion is, well, it's |
|
|
46:22 | let me back it up. It not a form of diffusion. And |
|
|
46:25 | reason it's not a form of diffusion and moving things from an area |
|
|
46:29 | high concentration down to an area of concentration. Another type of transport, |
|
|
46:35 | type of movement is this active we might refer to facilitated transport as |
|
|
46:43 | transport so you can kind of distinguish that way here. What we're doing |
|
|
46:49 | we're moving something from an area of concentration to an area of high |
|
|
46:55 | So things aren't moving down their concentration , they're moving, moved against their |
|
|
47:01 | gradient, right? So if I something on the floor that belongs on |
|
|
47:06 | table, which is basically my entire because I have four kids, |
|
|
47:11 | So what do I have to I have to go down and use |
|
|
47:15 | and I have to go take that and I pick it up and I |
|
|
47:19 | it on the table. It was expense of energy usually mine. |
|
|
47:25 | So with active transport, that term should tell you energy is being used |
|
|
47:31 | we're gonna go and show you these just a moment. But there are |
|
|
47:34 | types one where I'm using a directly energy in the form of A |
|
|
47:38 | directly. All right. And so what this is saying as primary does |
|
|
47:44 | secondary active transport doesn't use energy It uses stored up energy energy that |
|
|
47:52 | from a TP and now has been into potential energy. And I'll give |
|
|
47:56 | an example of this when we get these, but I want to move |
|
|
47:59 | the other forms of, of uh before we go into more details. |
|
|
48:07 | ? But when you see active think has somehow been involved either directly or |
|
|
48:13 | . OK. Primary is direct secondary indirect. When we deal with |
|
|
48:20 | there are some characteristics that you need understand. All right, di diffusion |
|
|
48:24 | dependent up a couple of things. first off size matters. So the |
|
|
48:29 | the solute, the bigger things the more easy, they bump into |
|
|
48:33 | . So it slows things down. you have itsy bitsy tiny molecules, |
|
|
48:36 | move faster than big molecules. All way to remember this. People like |
|
|
48:43 | , adults are large, three year are tiny. If you go to |
|
|
48:49 | football game with a three year old they let go of your hand, |
|
|
48:51 | run between everybody's legs. You trying catch them is you bumping into everybody |
|
|
48:55 | to catch them, right? So , fast, bigger, slow. |
|
|
49:03 | the rates of diffusion slow down for materials. Membrane thickness matters. All |
|
|
49:09 | . So if I have to travel point A and point B and that |
|
|
49:14 | is like stuff in between us, gonna take me longer than when there |
|
|
49:18 | nothing in between us. All So that thickness matters. The surface |
|
|
49:26 | . If I look at a chain fence, right? The chain link |
|
|
49:30 | has holes about so big me throwing golf ball at the chain link |
|
|
49:36 | some are going to get in, are not, right. So if |
|
|
49:39 | , if I was looking at what the rate at which I could throw |
|
|
49:41 | balls through a chain link fence, be a lot slower than me |
|
|
49:46 | um, say marbles through a chain fence, right? If I make |
|
|
49:50 | hole bigger, then it increases the at which I can throw the golf |
|
|
49:54 | through. So the surface area through you're traveling matters. Another way you |
|
|
50:01 | think about this is, um, now, the number of people that |
|
|
50:05 | leave this room through these two doors , is limited by the size of |
|
|
50:09 | doors, right? But we have lot of surface area on the |
|
|
50:13 | If I added more doors, I go through more quickly, right? |
|
|
50:18 | be the surface area thing. Uh already talked about steeper the slope, |
|
|
50:22 | faster I go uh temperature is adding more energy, things want to start |
|
|
50:27 | into each other a lot faster. the higher the temperature, the faster |
|
|
50:30 | rate of diffusion. And then the viscosity solution, which means the |
|
|
50:34 | material I have in there, the likely something's going into something else. |
|
|
50:38 | that is what viscosity is thickness, much material is in there is really |
|
|
50:45 | of what we're looking at. So will hear terms or read terms, |
|
|
50:51 | think in the book and talk about flux refers to the rate of |
|
|
50:55 | So here I've got a high concentration nothing. And so the rate of |
|
|
50:59 | for this molecule for red is basically very, very steep. So it |
|
|
51:04 | quickly move down its concentration gradient So its flux is its rate of |
|
|
51:11 | . All right. In this picture here, I've got lots of red |
|
|
51:15 | no red. I got lots of and no blue. So we have |
|
|
51:18 | rate of diffusion that are independent of other right red moves at its |
|
|
51:24 | blue moves at its rate. Now can be affected by the permeability of |
|
|
51:28 | membrane and so on. But what looking at here, the question we're |
|
|
51:32 | is what is the rate of diffusion that particular it? All right. |
|
|
51:39 | is the difference between the movement from to B and from B to |
|
|
51:47 | All right. So even though we that we have a uh basically an |
|
|
51:51 | rate here as we start moving it's going to start slowing down because |
|
|
51:57 | time a molecule moves over here, potential for a molecule to move over |
|
|
52:00 | . There's a one in three chance over over here. That's a one |
|
|
52:04 | seven chance that the molecules are moving the other direction. So the difference |
|
|
52:07 | those two movements is net flux and they're moving at the same rate in |
|
|
52:13 | directions, that is what equilibrium All right. So this is |
|
|
52:19 | even when you have multiple molecules, have to consider both of them. |
|
|
52:25 | we also have something called bulk flow bulk flow is something that we see |
|
|
52:30 | the body. But we don't really about it all that much when you |
|
|
52:34 | in. What are you breathing Hey, thank you. II I |
|
|
52:39 | that. A lot of people try get real scientific and oh, I'm |
|
|
52:41 | in oxygen. That's true. You breathing in oxygen. But what else |
|
|
52:44 | you breathing in nitrogen and carbon And a whole bunch of stuff that |
|
|
52:50 | don't want to bother memorizing because it less than 0.000 something percent of the |
|
|
52:55 | solution. But the majority of stuff breathing in is nitrogen, followed by |
|
|
53:00 | , followed by carbon dioxide, followed a whole list of things like |
|
|
53:04 | especially in Houston when we have a environment, stuff like that. So |
|
|
53:07 | I breathe in my body only wants of those things. What does my |
|
|
53:12 | want oxygen? Right? But bulk says I create a pressure gradient that |
|
|
53:19 | in all the stuff, the air then I'm gonna deal with the individual |
|
|
53:26 | down their particular pressure gradients. So moving carbon dioxide from my body into |
|
|
53:32 | lungs and I'm moving oxygen from my into my body. And so that's |
|
|
53:36 | bulk flow, bulk flow, it's the air moving in. And then |
|
|
53:39 | I breathe out the air moving out some slight changes in the concentration of |
|
|
53:46 | particular gasses in the body, we bulk flow as well. When we |
|
|
53:51 | materials from the blood into the interstitial or from the plasma into the interstitial |
|
|
53:56 | and vice versa. We're not nitpicking well. I only need glucose to |
|
|
54:00 | out. I'm only moving the fat . No, no, it's all |
|
|
54:04 | it. All of it moves in directions, but we pick and choose |
|
|
54:09 | to go into particular cells from the fluid. But again, we're dealing |
|
|
54:13 | pressure gradients driving all of the fluid all the stuff in the fluid that's |
|
|
54:20 | flow very, very different than these things that we're talking about with regard |
|
|
54:25 | diffusion. So a membrane is considered be permeable when it allows a given |
|
|
54:32 | to pass through and impermeable when it allow a given substance. But there |
|
|
54:37 | a lot of substances. And here's an example of some of the substances |
|
|
54:41 | your body. This isn't even a list. Obviously, it's not a |
|
|
54:44 | list. So your plasma membranes are to some things and impermeable to other |
|
|
54:51 | . And because of that, we our membranes. These plasma membranes selectively |
|
|
54:59 | and selective permeability centers around. For most part, the degree of hydrophobic |
|
|
55:07 | lipophilic. That's the same term or hydrophilic versus N slash lip AOB for |
|
|
55:16 | , molecules like oxygen and carbon dioxide no polarity and they, they lack |
|
|
55:24 | sort of degree of hydrophobic or They're neither hydrophilic or hydrophobic, they |
|
|
55:31 | go. So membranes are selectively permeable these gasses, gasses just move wherever |
|
|
55:39 | a pressure gradient right. But when talking about, for example, |
|
|
55:43 | ions want to be wherever there's they're hydrophilic. So, a membrane |
|
|
55:48 | impermeable to these charged molecules. All . Well, what about glucose? |
|
|
55:54 | doesn't have a charge? You're It doesn't have a charge, but |
|
|
55:58 | big. And if it's too big can't pass through. But what about |
|
|
56:04 | ? See, water passes through just ethanol does. Why does water? |
|
|
56:09 | , water is weird. Even though a polar molecule, it's a tiny |
|
|
56:13 | molecule. So it just goes where wants to go. It breaks all |
|
|
56:17 | rule, all the rules. People that yes, that's, that's |
|
|
56:27 | a really good question because I kind just assume. So, hydrophilic means |
|
|
56:31 | loving. All right, the opposite hydrophilic is hydrophobic. All right. |
|
|
56:37 | hydrophobic is water hating. So the term or the or the the equivalent |
|
|
56:44 | is if you are hydrophilic, that you are likely lipo phobic, |
|
|
56:51 | Meaning if you love water, you fat and if you hate fat, |
|
|
56:57 | love water and there's the other, opposite is true as well. If |
|
|
57:00 | love fat, you hate. Do just say the same thing again? |
|
|
57:04 | getting lost here. If I'm water , I'm fat, loving. If |
|
|
57:08 | water loving, I'm fat hating I got it right. Poor and |
|
|
57:14 | are water loving. All right. you're not charged, if you're not |
|
|
57:20 | , you're likely fat loving. All . So you can see this just |
|
|
57:27 | of gives you a demonstration of what it is that allows you to pass |
|
|
57:31 | the membrane. And so if the is selectively permeable, that means we |
|
|
57:36 | to have mechanisms to move the things want to move. And that's where |
|
|
57:40 | these different things come in where diffusion important. So these would be governed |
|
|
57:45 | simple diffusion. But these over here going to be governed by one of |
|
|
57:50 | facilitated mechanisms. All right, and there's water. Oh My goodness, |
|
|
57:57 | just crucified. You guys heard of , right? You want to try |
|
|
58:02 | give me a definition of osmosis or you just want me to just, |
|
|
58:05 | , see here's the thing, if taking in chemistry, they're gonna give |
|
|
58:09 | a definition. If you take it physics, they're gonna give you a |
|
|
58:11 | weird, weird strange definition. And in biology, we give you a |
|
|
58:15 | different one than chemistry and then you of walk around going. I really |
|
|
58:18 | understand osmosis. This is what osmosis . It's water diffusion. What do |
|
|
58:23 | know about diffusion? It's a molecule moves from an area of high to |
|
|
58:27 | area of low concentration. All problem is in chemistry, they don't |
|
|
58:32 | about water, they care about the in the water. And so when |
|
|
58:36 | trying to give a definition about osmosis you're focusing on solute, it turns |
|
|
58:42 | backwards. So what they usually tell in chemistry, it's moving from an |
|
|
58:46 | of uh uh low solute concentration in area of high solute concentration, which |
|
|
58:50 | backwards in what you just learned, ? I mean, it's not, |
|
|
58:54 | it sounds backwards. Osmosis focuses on , water, moving down its own |
|
|
59:00 | . So if I have 100% solution water, that means it's 100% |
|
|
59:05 | But if I have a 50% solution water at 50% water, 50% |
|
|
59:10 | If I focus on the water, moving from 100% to 50% water is |
|
|
59:14 | down its gradient. See how that . All right. Now, water |
|
|
59:22 | move through a membrane because reasons it's and we don't want to go |
|
|
59:29 | All right, just go with it and it can pass through. If |
|
|
59:35 | want to move, move water you give it a channel. It's |
|
|
59:38 | an aqua. All right. So diffuses can do, do that as |
|
|
59:45 | . But what we're doing is we're to be moving in ways. That |
|
|
59:49 | of sound weird. Now, what gonna do is I'm gonna try to |
|
|
59:52 | this simple for you. All I can't always promise it's going to |
|
|
59:56 | simple, but I try. All , I'm gonna come to this slide |
|
|
60:00 | we're going to get here in just second. Oftentimes you'll see this picture |
|
|
60:04 | it's like, look, I have , the red dots are supposed to |
|
|
60:08 | the concentration of solute around the blue , which is the water. So |
|
|
60:14 | , do you see how the picture flips it on us in terms of |
|
|
60:17 | we're trying to focus on. What care about is the water. But |
|
|
60:21 | we're trying to do is we're trying create equilibrium in the system. In |
|
|
60:23 | words, we want balance in terms the water and the solute together. |
|
|
60:28 | what we're trying to do is we're to move water wherever there are solute |
|
|
60:30 | that we dilute the solute out so both sides have the same dilution. |
|
|
60:35 | that kind of makes sense? So if I have 10 particles of |
|
|
60:39 | over here and one particle is something here, I'm gonna try to get |
|
|
60:43 | so that I have an equal amount particles versus uh to water ratio. |
|
|
60:49 | , that's, that's what what the try to do. But if I'm |
|
|
60:52 | you just focus on the water, way does the water want to |
|
|
60:55 | It wants to go until the two have the same water concentrate. Does |
|
|
61:01 | makes sense? So water is going keep flowing in this direction until it |
|
|
61:06 | . So what prevents it from flowing direction is pressure. Every liquid has |
|
|
61:14 | pressure, it's called a hydrostatic Hold up your water bottle. Thank |
|
|
61:21 | . Water in there is the water out going everywhere. No, but |
|
|
61:25 | wants to, it wants to Why? Because it's a pressure trying |
|
|
61:29 | escape. You can put it You have to hold it up. |
|
|
61:33 | . It's trying differently. But the is creating a, uh, an |
|
|
61:37 | pressure that prevents the water from I have fluid in here. It |
|
|
61:42 | hydrostatic pressure. It wants to escape well. It can't, the metal |
|
|
61:46 | allow it. Pick any sort of that you're carrying water. If you |
|
|
61:50 | water in a paper bag, will escape. Yeah, because there's not |
|
|
61:55 | pressure to hold the water in, it will slowly seep out. |
|
|
61:59 | So water wants to go where there's water. But if there's an opposing |
|
|
62:06 | , then it won't move. So water in here and in there and |
|
|
62:10 | the other drinks that's pressure in there called the hydrostatic pressure. All |
|
|
62:15 | So it's the pressure that a fluid outward away from its concentration. That's |
|
|
62:22 | first one. All right. the osmotic pressure is the opposing pressure |
|
|
62:30 | a fluid that prevents the movement of fluid. Now, I'm gonna give |
|
|
62:34 | an example and hopefully this will make . All right, you're going clubbing |
|
|
62:39 | your friends, but you own a car. Do you have? You |
|
|
62:43 | what a smart car is? How people can you fit in a smart |
|
|
62:47 | ? You got one, how 323 you guys aren't trying, remember |
|
|
62:52 | going clubbing, you're college students. many people. Can you fit in |
|
|
62:56 | smart car? Hey, I see . Yeah, it's like, I |
|
|
63:01 | know, I haven't tried yet. not the question, how many fit |
|
|
63:04 | a smart car comfortably because I think that answer isn't one. Right. |
|
|
63:09 | how many people can you fit in space? There is a volume inside |
|
|
63:12 | space and I can start shoving people there. Right. So I'm getting |
|
|
63:16 | , number seven people are lying across laps. I get to number eight |
|
|
63:20 | I push someone in, someone's going pop out the other side, |
|
|
63:24 | What we've done is we've reached the where the pressure inside the vehicle is |
|
|
63:27 | great that it causes another molecule to out or causes the person to pop |
|
|
63:31 | . Osmotic pressure is like that. the hydrostatic pressure of that fluid. |
|
|
63:36 | one molecule comes in, it's so that it says, uh uh and |
|
|
63:39 | that molecule right back out or kicks molecule out the other direction. So |
|
|
63:44 | the point where osmosis stops and when reached the point of equilibrium. All |
|
|
63:50 | . So it's the opposing pressure. so hydrostatic pressure is the pressure all |
|
|
63:55 | have. But the osmotic pressure is hydrostatic pressure that opposes the inflow of |
|
|
64:02 | into that space, right? So inside that little smart car pressure is |
|
|
64:07 | up, pressure is building up and you put one person in there and |
|
|
64:12 | person pops out right. That would the osmotic pressure if the people were |
|
|
64:18 | molecules that makes sense. Sort All right. That is correct. |
|
|
64:29 | question with hydro osmotic pressure is a of hydrostatic. Yes, it is |
|
|
64:33 | type of hydrostatic pressure. The type opposes movement into that space. |
|
|
64:43 | though you're going into nursing, this the important term tonicity. All |
|
|
64:48 | This where flips it all back back . It says we're gonna ignore the |
|
|
64:52 | for a moment. We're gonna ask question, what's in that water? |
|
|
64:56 | right. So you can see the hypo iso hyper hypo is less iso |
|
|
65:01 | same. He is more. The half of the term deals with the |
|
|
65:10 | tonic. It's the stuff that's in water. So it says less |
|
|
65:16 | same solute, more solute. And when you're looking at a solution and |
|
|
65:21 | asking the question, what is gonna when I put a in this |
|
|
65:27 | All right. Is the water going flow? Oh My goodness. It's |
|
|
65:32 | . But they're flipping it on right? If I have low |
|
|
65:37 | what do I have high water? I have high solute, what do |
|
|
65:42 | have low water? So notice they're you focusing on the wrong thing because |
|
|
65:51 | want you to, they usually, you have this question asking which way |
|
|
65:53 | water flow? If I put a into a hypotonic solution, if I |
|
|
66:00 | a cell and put it in a solution, there's more water outside than |
|
|
66:06 | that cell. So water is going flow into the cell and cause the |
|
|
66:10 | to swell up. And in some pop, that's a bad thing, |
|
|
66:21 | ? If I give a cell and it into an isotonic solution, nothing |
|
|
66:26 | because it says it's the same water both sides of that membrane. But |
|
|
66:30 | I have a hypertonic solution, put cell inside that there's less water in |
|
|
66:35 | solution than inside the cell. So cell shrinks up as the water |
|
|
66:41 | All right. And you're saying, , why do I care why you |
|
|
66:44 | this is important if I'm going into ? All right, a person comes |
|
|
66:47 | you dehydrated into the hospital, you a, you put an IV into |
|
|
66:53 | arm. What do you want inside IV? You don't want anything that's |
|
|
66:58 | to cause those cells to pop, you need to give them more water |
|
|
67:03 | they're dehydrated. So what you do you lower the slope for the movement |
|
|
67:08 | water. So you give them a like say for example, D five |
|
|
67:12 | which is a 5% dextro solution, ? So water moves slowly in. |
|
|
67:19 | it doesn't cause the cells to All right. Oh They got red |
|
|
67:23 | , their eyes are so dry. do you give them Visine? Which |
|
|
67:27 | an isotonic saline solution, right? it's basically saying it has the same |
|
|
67:33 | concentrations but what you're doing is you're moisturizing the surface of your eyes. |
|
|
67:40 | right. So tonicity is the ability a solution to change the state of |
|
|
67:46 | cell, right? That you put that solution? How are we doing |
|
|
67:51 | time? I haven't even bothered looking . Oh, man. So I |
|
|
67:56 | some time here. Good. All . I know. You're like, |
|
|
68:00 | ? Yeah, I still got All right. 12 minutes here. |
|
|
68:04 | um when we talked about these transport , what we're basically saying is what |
|
|
68:08 | they transport? They, they have very specific things. So channel |
|
|
68:12 | as we said, they create these filled canals. And so they're going |
|
|
68:15 | use primarily to use very, very materials like ions to pass back and |
|
|
68:20 | across the membrane or water carriers. the other hand, on the other |
|
|
68:25 | , are looking for bigger things, huge things, but bigger things like |
|
|
68:29 | molecules or amino acids use carriers as way to move things across the |
|
|
68:34 | All right, there are different types channels. All right, what we |
|
|
68:39 | is that channels have a gate to , that gate can be opened or |
|
|
68:44 | . So what is the trigger that them to open and close? That's |
|
|
68:46 | modality is the word we use. there are different types of modalities you |
|
|
68:50 | have voltage. So voltage basically says is the charge build up around that |
|
|
68:56 | ? So when you change the it causes the change in the shape |
|
|
68:59 | the protein I can have a So a ligand is a word that |
|
|
69:04 | , that means molecule that binds something . And so I can have a |
|
|
69:10 | bind to the channel that causes the to open or close. It's just |
|
|
69:14 | a key, right? I can something that's mechanosensory. If I twist |
|
|
69:19 | manipulate the membrane of the cell, manipulation of that membrane causes the manipulation |
|
|
69:25 | the shape of the molecule which causes to open or close temperature is another |
|
|
69:29 | . These are just examples, these the most foremost common types, but |
|
|
69:33 | are other means of opening and closing . All right, I brought primary |
|
|
69:42 | up. I said active transport is in which direction with or against your |
|
|
69:48 | against, right. So I'm going low to high. So I need |
|
|
69:51 | . So in this case, what going to do is I'm showing you |
|
|
69:54 | is the most common type. this particular type of ATP ace or |
|
|
70:01 | is an at a meaning it already an enzymatic portion to it that causes |
|
|
70:07 | the the carrier to change its I just said give it energy and |
|
|
70:11 | does. So. All right. this is the sodium potassium A TP |
|
|
70:15 | pump. These types of of pumps are active transport. So when |
|
|
70:22 | hear active transport or pump, they synonymous with each other. So |
|
|
70:28 | what we're doing is I want to potassium out of the cell or sorry |
|
|
70:34 | into the cell. And I want move sodium out of the cell. |
|
|
70:37 | have lots of sodium out of the . I have very little sodium in |
|
|
70:40 | cell. So me moving sodium out the cell is against its gradient. |
|
|
70:43 | have lots of protein or sorry, lot of potassium inside the cell, |
|
|
70:47 | little potassium outside the cell. So pump is serving to create that inverse |
|
|
70:52 | . I'm using the energy to do . And so this pump is allowing |
|
|
70:57 | to move things two things in opposite . And this is one of the |
|
|
71:03 | that we create an imbalance between these . Now, if I put a |
|
|
71:07 | bunch of sodium out here that I'm and pumping and pumping, I just |
|
|
71:11 | energy to create a gradient that favors movement of sodium into the cell. |
|
|
71:17 | lots of sodium outside the cell, little sodium inside the cells. Potential |
|
|
71:22 | . Let me make it so that guys can see this clearly if I |
|
|
71:25 | 1000 ping pong balls lying around the and I start throwing them into the |
|
|
71:30 | , right? The first couple of pong balls is not a problem. |
|
|
71:32 | after a while every time I open door that those ping pong balls want |
|
|
71:35 | come out, right? So it's to take energy for me to move |
|
|
71:38 | into that door. But the moment open that door, they're just going |
|
|
71:41 | want to flow on out that's potential . So those ping pong balls stored |
|
|
71:45 | inside the closet potential energy. So act of transport uses energy directly to |
|
|
71:54 | molecules against their gradient. Here's another of that, this is a proton |
|
|
72:00 | when we talked about the lysosomes creating low ph environments. That was what |
|
|
72:05 | going on here. We're using these of pumps to use energy to pump |
|
|
72:10 | into the lysosome inside the cell becomes lot or inside the uh the |
|
|
72:16 | the lysosome much, much lower ph , very acidic secondary active transport takes |
|
|
72:25 | of that um pumping system. So I did, I pumped a whole |
|
|
72:30 | of sodium outside the cell. Sodium to come into the cell, but |
|
|
72:34 | want to move something into the cell its gradient. Let's think of things |
|
|
72:38 | we can move inside glucose amino All right, glucose is basically energy |
|
|
72:45 | jet, right? It's basically a bunch of energy that just needs to |
|
|
72:50 | released from all those bonds. But don't want to use energy to move |
|
|
72:53 | . Doesn't that sound like a stupid ? Right. So what I want |
|
|
72:57 | do is I want to store up to move energy so I can use |
|
|
73:03 | a thing like a glucose transporter that secondary active. All right. What |
|
|
73:09 | that mean? Well, if sodium to come in, it can come |
|
|
73:12 | as long as it brings a glucose it. All right. So glucose |
|
|
73:18 | to come in but I can't because would be moving uphill. So I'm |
|
|
73:23 | use the potential energy stored in that gradient to help move something against its |
|
|
73:30 | . So in this particular case, moving in the same direction, this |
|
|
73:34 | called sim I'm moving in the same . So one is moving down its |
|
|
73:39 | , the other one is moving up gradient, but they're both going in |
|
|
73:42 | same direction into the cell. This how we move glucose and amino acids |
|
|
73:47 | cells by using the pump, which uses a TP directly. I |
|
|
73:53 | potential energy that potential energy is that transport to move the glucose into the |
|
|
74:01 | against its gradient. That kind of sense. Now, I used to |
|
|
74:06 | an example but I'm running out of one and two. I'm finding my |
|
|
74:11 | doesn't work anymore because I used to the example of Ladies night in New |
|
|
74:15 | when I was in college. But guys are all too young to drink |
|
|
74:22 | for a couple of y'all right. two when I give this, both |
|
|
74:27 | you guys just stare at me like ladies night. So I'll give it |
|
|
74:32 | day if you guys want to hear , I'll give you the example. |
|
|
74:35 | right now, no, you there nothing on the slide, you need |
|
|
74:39 | memorize what I'm showing you on this . And on this slide is that |
|
|
74:46 | idea of active transport and secondary active is conserved over and over and over |
|
|
74:55 | . So if you learn what active is once and understand it, you'll |
|
|
75:00 | it again. So this is the we looked at, you'll see it |
|
|
75:03 | and again and again, I think another one there. Yeah. What |
|
|
75:12 | secondary active transport? Well, here's channels, but here's secondary active |
|
|
75:17 | Secondary active transport. This is antiport they're moving in opposite directions there, |
|
|
75:27 | , import, antiport, antiport, . All of those are secondary active |
|
|
75:35 | mechanisms. And this is just touching tip of the iceberg. There are |
|
|
75:40 | of these if you learn it once learned it 1000 times. All |
|
|
75:48 | Ok. Man, I didn't even to vesicular transport. All right. |
|
|
75:52 | we come back, we'll deal with transport. It's not that hard. |
|
|
76:04 | . Three Kelly, what's up |
|