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00:05 Yeah. Oh yeah, that who know? Ok. Yeah.

00:32 testing, testing, testing. Um, let's get going nice

00:46 Like the rain. It's good Ok. Although if you got your

00:50 , you might not like it. , anyway, fitting since we're talking

00:57 not till the end hydrological cycle, ? Rain. Ok. Um All

01:07 . So, uh where are we ? So we are actually coming to

01:13 end. Uh So these last well, first we gotta finish up

01:18 last part of um 14, which a photo trophy. We started that

01:26 , Tuesday. So we'll finish it and then go into five and

01:31 But remember very small parts of those , right? So it's just just

01:36 one section in five on a No, I'm gonna start with one

01:43 there. Um, but again, point is it's, it's, it's

01:47 an entire chapter. Just, just section. Ok. Same with uh

01:52 . So it's only uh those two . All right. So,

01:57 what we don't finish up today, We'll finish up on Tuesday.

02:03 And, and we'll finish every, finish all of it. There's

02:07 there's not that much more to So, um, that will be

02:12 the quote, catch up, catch up, day. And in

02:14 course schedules always kind of, I it in, in case I'm a

02:19 behind or something. So I have day to and we can finish the

02:24 . So, um, so we , you know, two next

02:28 Thursday, but obviously that's not, is not on the exam,

02:37 Ok. So, uh it's one these. So I'll, I'll uh

02:41 class so I'll post a video tomorrow you can watch that next week or

02:47 . Um, ok. What We got? So usual stuff.

02:52 the um, unit quiz. I mean, it's, it's the

02:58 thing as a weekly quiz. It's longer, it's more comprehensive. It's

03:01 of like a summary of the whole . So you're gonna have chapter 1

03:05 , 14, you'll have five on . You'll have the only part of

03:11 that's on there is what we talk today, right? So, what

03:15 probably do is post some questions that to the part of 22 we don't

03:23 about. Ok, I, I'm that we don't, that doesn't show

03:27 on the quiz. Ok. So post those like on Monday or Tuesday

03:31 week and you can, uh, at those. Um, what

03:35 So, exam of course is a from uh, tomorrow, a week

03:40 Friday. So the 22nd 23rd scheduler open. So, if you haven't

03:46 up, uh, let's see. else? I think that's it.

03:50 , the, so the uni, , it, it, it's,

03:54 , it's 28 28 questions, I it is. So, you'll have

03:59 minutes. Ok. Um, the exams exams are like 34 to

04:08 questions in that range with an Ok. So, um, to

04:15 of try to give the equivalent in of, you know, but these

04:19 quizzes kind of Timewise somewhat similar. , uh anyway, uh I think

04:25 it. Anybody got any questions about we get going here. OK.

04:31 right. So we're going to start a clicker question, I think.

04:38 , no, we're not jump the . OK. Fake out. All

04:44 . 222. OK. I have delete that one later. All

04:48 It's the next slide after this. . So we are uh OK.

04:54 we like to start with context and , right? So we have,

05:00 th 14, we were, we've looking at redox reactions and uh began

05:08 respiration, right? And how um redox reactions are really occurring in the

05:16 transport chain for the most part, . So in respiration, we uh

05:21 a have a donor giving up electrons then going to an acceptor and then

05:26 translates to energy production that is used pump protons out and then the creating

05:31 gradient of protons high out low in attraction, proton motive force,

05:39 Um They come in through the A releasing energy forming a TPS,

05:45 Uh So respiration can occur aerobically, . Um We also learned last time

05:54 um the front part, right? uh lits, right? So an

06:00 sources can be the source for right? Um And so now we've

06:06 to um light is a driving force . So you'll see uh the mechanism

06:15 a TP formation. Photo phosphor looks to respiration in that involves electron transport

06:24 , proton pumping a TP A. those kind of components are the same

06:29 not for all photos systemss, but most OK. Um And so uh

06:36 that's what we're focused on here is . OK. Different types of photo

06:41 and uh what they all have in , you see there. So they

06:43 be chlorophyll based non based, Um But what's common to all of

06:49 is a light absorbing molecule typically stuffed a membrane that absorbs light. Then

06:57 that the of light excites the you then have um a conversion of

07:04 energy to chemical energy, right? of A TP N A DH and

07:11 NAV PH. OK. And so N ad ph oops, not yet

07:19 ad Ph OK, because all we've so far really is just NABH.

07:24 so it's not a general rule, you often see any VPH involved in

07:33 processes photosynthesis. OK. Um That's you see that but uh any

07:41 I mean they both serve the same , right? Electronic carrying molecule.

07:45 um all right. So we did one type of photography and that's what

07:52 question is about. OK. We about last time at the end.

07:57 me open that. So the the ops in these photo, right?

08:03 what's true regarding that up here? . Oh Life. Mhm.

08:42 No, no. OK. So . Let's count down from 40.

09:24 . Mhm. Do do do K 876 321 pause but he and his

09:57 speak now. There we go. . All right. All right.

10:04 we got like CNG. OK. If you answered see you are

10:16 Yeah. So um this type of trophy. OK. Um Basically

10:26 it's a light driven proton pump. no, it's different from chlorophyll base

10:34 you don't have a electron donor. right. It doesn't involve that or

10:40 transport chain. OK. It's just of light being absorbed, right?

10:46 excites the molecule that retinal molecule bound the protein absorbs that light changes the

10:56 that induces protons being pumped out. . So there's no no electron donor

11:03 or electron transport chain or anything or it's just based on photons of lightning

11:07 and that resultant change when it absorbs causes the proton to be pumped

11:14 right? So that's why it doesn't fluy pigments. It doesn't require electron

11:21 . OK. And it absorbs green . OK. And so they don't

11:28 green, they absorb green light and look like purplish color. OK.

11:36 like in this diagram here that's full those types of bacteria. OK.

11:44 color. OK. Absorbed green, purple light. OK. So uh

11:50 questions about that? Mhm Those are the main things to remember about

11:56 about this type of photography. Um Oh I forgot I had this

12:03 written here. There you go. . Um All right. And so

12:09 arch are the types that do this there are bacterial types that can do

12:13 as well. OK. So uh move on to chlorophyll based systems.

12:21 . So I'm assuming that your familiarity with how plants photosynthesize algae,

12:29 the old oxygen involvement type of photosynthesis based. And of course, the

12:36 just absorption spectrum of chlorophyll. And the peak absorption of light in the

12:42 blue and red areas. And so course, you can expand that by

12:49 other light absorbing molecules to the system chlorophyll like carro noid pigments and xy

12:55 and blah, blah. OK. could kind of expand the range and

12:59 beyond blue to maybe orangey colors. . So uh so bacterial chlorophyll.

13:08 the chlorophyll A and B is what see in plants, algae and santa

13:13 . OK. Slightly different version, dramatically different, but a little bit

13:18 different is bacterial chlorophyll. And that's you see in these other photos systems

13:23 that are only in bacteria. Um And we'll get into that.

13:28 but, but there is a difference these two and so you can see

13:32 in the absorption spectrum, right? mature chlorophyll shown here, OK.

13:41 these peaks out here. So remember know physics, physics of wavelengths,

13:46 of light, long wavelengths, low right, short wavelengths super high

13:53 right? Think of x-rays gamma rays short wavelengths super high energy,

13:59 Radio waves very long, right? not, they're very low energy.

14:05 . So as you go out it uh it's absorbing lower energy wavelengths

14:11 light. OK? And when you these types, OK? And

14:18 and they coexist with each other. you look at a for example,

14:23 water column, right? You'll have your algae throughout the marine environment,

14:29 have algae on top that are absorbing , typically orangey colors and um and

14:39 the light will come down, So that light, the light that

14:42 down then below them that's not absorbed gonna be lower energy light. And

14:48 it's gonna be this over here. so then below, you'll see these

14:55 photo tropes that use these low energy of light. OK. And um

15:03 the oxygen photosynthesis. So again, is what you like they are most

15:08 with. I probably seen this a times. But um this type of

15:20 trophy and what we just talked, bacterial chlorophyll base is those bacterial

15:27 photo tropes have their photos systems one two and that's really different. So

15:33 either have both systems, they have one or the other. OK.

15:37 that's your three types. OK. we're just focused on what we call

15:42 photosynthesis because um using water as our donor, right? So remember these

15:49 based systems are gonna have electron you're gonna have electron flow. So

15:54 gonna have those things we're used to that we saw in respiration.

15:59 So water um lights absorbed. That energy translates into electrons being knocked

16:09 of the photos systems. OK. so that means when that happens,

16:17 two has become what has become or low X id oxidized, right?

16:33 electrons. So it's now oxidized when happens. OK. And that makes

16:40 a powerful reducing agent. A reducing wants to grab electron uh wants to

16:47 electrons and become reduced, right? oxide form. Now it wants to

16:52 where is it? Grab it grabbed it from water. OK.

16:57 so hence that we evolve oxygen. right. So that's the photos

17:09 OK. So the electrons then pass the photos system one. OK.

17:16 here we go, here's our electron chain proton pumping, right? We've

17:23 this stuff before. OK. It's light is the driving force here.

17:28 . And so photo phosphorylation produces a obviously. OK. So then when

17:34 get down to PS one right, energy now kind of pump it up

17:40 , it comes light, knocks it again. OK. So PS one

17:44 the system, one is fed by coming from PS two. OK.

17:49 the path here is like that like , like that, like that like

17:58 . OK. And so um so you look at it sideways, it's

18:03 a Z, that's why they call A Z scheme. OK. So

18:08 so the final acceptor is this Nedpnedp . So again, we have electron

18:15 chain but, but, but the two, I'm sorry, one system

18:22 not associated with a TP formation. associated with NDP H formation.

18:27 So let me uh kind of clean up a little bit. Yeah.

18:32 PS one right is associated with that . PS two with a TP

18:40 OK. And so um and we're about auto tropes here, right?

18:46 auto tropes. So that's why I this in here, right? Because

18:49 energy produced is gonna be needed for . I remember co2 fixation very energy

18:57 . OK. And that's where it from in a photo troph, at

19:01 photo autotroph. OK. So um the electron flow like that,

19:11 Water PS two PS one A P reduced to and ad ph um All

19:20 , now this just shows you kind the, you don't need to memorize

19:25 components here. OK. For these , don't worry about that.

19:31 Uh But like with respiration, the occurring in the membrane, right?

19:36 is full of these pigment molecules, of electron transport chain. So you

19:40 have Cytochrome, that's what cyt is for. Um you do have.

19:45 here's water, right? PS two PS one over here. OK.

19:57 N A DH oh Sorry over here two to N AD P.

20:05 Electron flow. And so we again proton gradient protons being pumped out,

20:13 ? So that's associated with PS right? So that's where the A

20:18 formation comes in right protons going down . OK. So again, the

20:26 kind of mechanism, just different components here but same principle, right?

20:31 protons out getting the energy back to A TPAS. OK. Um All

20:38 . So photos uh and then for oxygen form, you don't need to

20:44 their reaction, but it's just showing the oxidation of water to form 02

20:52 uh reduction of N AD P AD OK. So energy formation,

20:58 This is gonna be lots of these gonna be needed to fix CO2 and

21:02 where most of this is going OK. Um That's oxygen photosynthesis.

21:11 forming oxygen. OK. Any questions that? OK. All right.

21:17 let's look at these other two right? So the first one involves

21:23 types that only have photos systems OK. So remember that's associated with

21:28 ad ph formation. OK. So green sulfur bacterium are a type that

21:34 in this group. OK. There others, but it's typically one that

21:39 used to represent it. And donors. So it's not gonna be

21:45 , right? The fact that it's water means you're not gonna produce oxygen

21:51 it's oxidized because it doesn't use right? That's why we call it

21:56 oxygen photosynthesis or anaerobic. OK. it uses things like H two sh

22:03 iron, OK? You oxidize those don't form. OK. So,

22:10 so they absorb light at the lower . OK. So 8 40 is

22:16 that refers to well, to be energy near far red. Um And

22:23 , uh so, but again, being a PS one system is gonna

22:28 any DPH. OK. Now, see here down here, the structure

22:37 not an organelle um doesn't have a lipid bilayer does have some fossil aids

22:43 there, but it's a, a that um enables it to, it's

22:48 of chlorophyll pigments, these bacterial chlorophyll , OK? It's called the

22:52 OK. When we get in the three in a bit, we're gonna

22:58 through all kind of the structure you in a pro Caro and this is

23:02 type you see in a photo, . So basically just is stuffed full

23:08 these photosynthetic pigments. OK? And again, just because it has PS

23:17 which is a, which is uh linked to an ad ph formation.

23:23 still can make a TP it still a proton gradient. It's just not

23:26 to a PS two system, So you can see protons forming here

23:33 a result of the H two S , being oxidized right to form elemental

23:41 and two HS right. And then electrons go to feed the system.

23:48 you're forming protons as a byproduct of oxidation. OK. You um then

23:55 course, these can accumulate, And they'll go through an A TP

24:02 OK. It's just not part of PS two system. OK.

24:09 so just remember that, right? doesn't that PS two doesn't mean it

24:14 make a TV S it can't Just not associated with that particular

24:21 OK. Um And so these are tropes right? Now, we make

24:25 distinction because the next group, the that have PS two, those are

24:32 photo heter tropes. OK. So this means it's gotta fix CO2.

24:39 the way he gets his carbon fixing . Yeah. So then the last

24:46 is this type, right? So , I thought he OK. And

24:53 the light energy they line is just lower energy than what we just

24:58 OK. So 8 70. Now like it's like infrared light which is

25:05 low energy. OK. Um So amount of light absorbed or the wavelength

25:12 light absorbed correlates to of course right? Lower wave length, less

25:20 , higher more energy. OK. so that has an effect on the

25:26 the photos systems in terms of its to grab electrons from another molecule.

25:33 . So to split water, it a lot of energy, right?

25:36 those but sano bacteria and algae and absorb higher energy light. So it

25:41 them to do that. OK. thing is so low energy, it

25:46 really ramble electrons from a molecule from donor. OK. So what it

25:52 is it, it basically just cycles electrons. Uh it has OK.

25:59 you see here, here's electrons that just basically being cycled back and forth

26:05 the system. OK? And that's feeds it kind of kind of a

26:10 feeding mechanism if you will, but call it um cycling photo phosphor.

26:17 ? It all a little bit of energy of light it absorbs OK.

26:21 so, but it is it does a photo system too. OK?

26:28 so that enables it in there that's to a TP formation, right?

26:35 it it's a way for it to a source of a TPS using

26:39 And so these kind of bacteria use as kind of a as a as

26:46 extra, right? It it kind facilitates their metabolism, right? They

26:51 have to be given complex organic materials eat and break down. Ok.

26:57 when you see this term, The overriding uh part of it is

27:04 is that in terms of carbon, ? It's a header. What's the

27:12 , beep thing going on? Like me insane. Oh, here is

27:19 beep beep. Ok. Um All . So go to Hetro, so

27:26 remember that heter is the operative word and, and but it has this

27:32 to be able to use light length PS two to form a TP.

27:36 um good for it, right? All right. So just to kind

27:44 in one shot kind of just go the three times real quick,

27:48 Everything you see on there, that's oxygen photosynthesis, most photos,

27:52 plants, algae, santa bacteria. . And they're autotrophs. OK.

27:59 other system we just saw right? the system one that's in your green

28:04 sulfur bacteria. OK? They are as well. OK? But use

28:11 other than water, right? So don't form oxygen as a byproduct.

28:15 and oxygen. OK. Then the one, we just saw this

28:21 OK. The purple non sulfur This this goes away the CO2 because

28:28 a hero. OK? But, it has the PS two which is

28:34 with A TP. OK. So , that's your three groups.

28:39 Um Many questions about that. So didn't go into super details of pathways

28:46 things, right? So if you of this is the level of knowledge

28:49 take away here. Ok. all right. So let's just wrap

28:55 up with, with this question Ok, so we just talk about

29:00 this. Ok, let's see what got. Ok, like the,

29:33 . Ok, hold on. Ok, let's count down from 30

30:26 pan. That was, uh, give you a hint. It's not

30:47 , f ok. Oops. hold on, I was trying to

30:55 that. I heard the S word couple of times when I said

30:59 So OK, everybody change your OK. Here we go.

31:17 Is he? Yeah, speak Yeah, it's D OK. So

31:32 are to pick E or F. welcome. OK. All right.

31:37 questions. OK. No. Let's go to uh chapter five or

31:50 middle section there. OK. I instead of diving in arrow tolerance right

31:55 , I just one concept I kind just wanted to uh up nothing

32:01 The entirety of this chapter is about factors that uh I'm sorry, environmental

32:08 that influence growth. OK. Um salinity, right? Soil concentrations,

32:18 temperature obviously affect growth. Um I wanna say a couple of things before

32:24 get into a tolerance and that has do with talk about extremophiles before in

32:30 context of Archaea. OK. They're the only ones bacteria can live in

32:38 conditions as well. Um Maybe they, they can't tolerate the upper

32:46 of these parameters like Akea can but , they're typically there with Archaea and

32:54 their own kind of niche of high or load temp or high salt,

32:59 salt IP H low ph what have ? But these parameters here,

33:04 Temperature ph, polarity pressure as Ok. Um I hear the

33:14 Um dang off the hand of I'm gonna ding you, you

33:23 All right. So temperature ph also pressure um there are organisms that live

33:30 the depth depths of the oceans pressures they, and they require certain term

33:36 for this, their growth. Um for each of these parameters, you've

33:43 uh ranges of course and most things us are gonna be in the

33:48 right? Uh a meso file temperature , right? A a um neutral

33:56 that's the ph not a neutral ph um uh around the normal is a

34:04 salt concentration is like maybe 1% in environment. OK. Marine environment is

34:09 little bit higher. It's like Uh And the point is most of

34:12 , most life is in if it's bubble, not a bubble, but

34:17 this, most life is in whether it's ph temperature, what have

34:22 ? OK. But the extremes, . So obviously, organisms that live

34:30 the fringes of these parameters have adaptations enable them to live in these

34:37 Whether it's a membrane structure or molecules there that help them counteract high temperatures

34:45 low temperatures. Um, living in a halo file. Imagine that.

34:51 . You're constantly in a hypertonic right. Constantly losing water.

34:58 So you better have some way of that and they do otherwise they wouldn't

35:03 a halo. Right. So all have a different adaptations to, to

35:08 in these conditions. And so, number one, really, the,

35:12 effect of all these parameters, certainly , ph salinity and pressure is the

35:19 on the proteins. That that's why either can live or not live or

35:24 or not tolerate these conditions is because effect it has on the proteins,

35:29 nature is them breaks down their structure or charge interactions and they can't

35:36 right? So you use protein you're not gonna live, right?

35:40 these organisms that live in these extremes adaptations that enable their proteins to function

35:48 these, in these um extreme OK. So, and, and

35:53 other thing I wanted to mention here um uh this concept of an organism

36:03 a condition versus is it it, needs that condition for its optimal

36:11 OK. There's two different things. , e coli it's actually pretty um

36:23 units difference in ph right? Between to 8, it can remain

36:30 right? Um For several hours, not days. OK. Um That's

36:37 remarkable because remember that's a long scale 44 units difference is 10 times 10

36:44 100 times 10, 10,000 like Difference. OK. That's big,

36:50 ? To be able to tolerate, pretty good. OK? Um And

36:56 this diagram here is meant to show this is just a showing temperature.

36:59 if you, you could easiest, in ph or um salinity,

37:06 but nonetheless, the uh three different can have different responses. OK.

37:12 so if we look at X, these are three different bacterial strains

37:17 So, of course, if you're meso file, you're gonna be in

37:20 range. OK? And book you don't need to know the exact

37:25 . But because books kind of define range a little bit differently, but

37:28 usually say between 15 and 40 OK? But nonetheless, X and

37:35 and music are files, but each its own kind of sensitivity,

37:41 So this can't tolerate high temp. again, optimal growth growth rate,

37:48 ? It has its highest growth rate there. This one right here,

37:52 one right here, OK. So X, that's probably somewhere around,

37:59 don't know 35 or something. This guy a little bit higher,

38:04 that's 37 just hypothetical numbers here. so this guy, of course,

38:10 55 let's say, OK, so the thermoph file, the thermoph file

38:16 is Z OK. This guy it that high temperature that's optimal for its

38:24 , right? So it's dr thriving 55 degrees. It wouldn't do so

38:29 at anything over here or up this , right? It needs that

38:37 that high temp 55 plus or That's where it grows. Best,

38:41 growth rate, right? The same X and Y just lower temps,

38:47 ? But then you look at, , what about the pattern here?

38:50 . Well, this y is going this way, it's still viable,

38:56 ? It's viable there. It's not growing, but it's still alive.

39:03 ? If it weren't gonna be going , right? So it's viable,

39:06 can tolerate, right? So for if you wanted to take species Y

39:12 go, I wanna grow, I'm get as many cells as I can

39:16 my growth medium. But would I it at, I grow it at

39:22 temperature or pretty close to it? that's it optimal temperature for growth,

39:27 growth rate, right? Most cells , right? But I know that

39:31 temperature is increased to in upper OK, then it will, it

39:38 remain viable. It's is not gonna growing very well. OK.

39:43 but it has a wider tolerance for , high temp than does X

39:50 And that's every, every microbe is be different in terms of that,

39:54 sensitive, very narrow, right? are more tolerant, maybe more at

40:05 quote normal temps. I'm gonna, I'm out here or down here.

40:11 file. OK. So um so know, just because you see something

40:19 at a certain condition, extreme It may be OK. Maybe it's

40:26 , it's not, it may not its optimal optimal parameter for growth,

40:30 it can, it can handle it can, it can remain viable

40:33 quite a long time there. And , you know, that can have

40:37 things can have implications. You if you, we're talking about pathogens

40:41 , and um you're trying to get of them, for example, is

40:46 , listeria. Um Anybody heard of ? What does Listeria do? What's

40:55 about Listeria? I remember, And so Bluebell is ice cream

41:03 And so they're sacro files, not files, but they can, they

41:07 , they are, they can grow cold temperatures, they can grow at

41:09 degrees and significantly. And so the outbreak was due to Listeria and the

41:18 that not realizing that these things could remain viable at temperatures at which

41:24 make ice cream. All right, temperatures. So, um uh

41:29 you know, it can have, have an effect uh depending on what's

41:32 on. So, anyway, that's I want to say about that.

41:36 Any questions about that? Ok. right. So uh I guess think

41:43 us, us in the summertime, ? Could you, were you thriving

41:48 uh 100 and 10 degree? Feels temperature in Houston. He wanted to

41:54 me. You were gonna get me the ac, right? So,

41:58 . Um yeah, humans aren't really to for extended periods of time to

42:04 100 and 10 degrees, at least outside of an ac unit, you

42:06 . So um ok, let's look aero tolerance. OK. So oxygen

42:14 kind of its own unique thing if will um microbes are gonna have different

42:22 to it. Ok. Some will use oxygen, right? Aerobic

42:29 Ok. Others uh cannot use Ok. Others um can or

42:37 they can be in between. So the thing about oxygen is

42:44 you know, knowing it has that high reduction potential and that actually means

42:50 very reactive. Ok. And so can interfere with um reactions, especially

42:58 the cellular respiration, those those reactions can um um and again, it

43:04 form byproducts here, toxic byproducts as result. Um And so the we

43:12 to have protection. So if a is going to live in an area

43:17 there is oxygen present, whether it oxygen or not, right? It's

43:24 have protection against it, right? even if it doesn't use it,

43:28 can still interfere with its certain of enzymes, creating these toxic byproducts that

43:33 its proteins and nucleic acid and So if you're gonna live in an

43:38 world, you gotta to have protection it. Ok? That's in a

43:42 . What this is about here. . And so we call these

43:46 reactive oxygen species and these are the ones. It's the same thing you

43:51 sure are aware of, of what call foods that are, have high

43:58 activity. I think I said that . Um And it's really to protect

44:02 you, you form the same things your cells, you form the same

44:07 and uh it's thought to be one the factors that contributes the aging

44:12 And um so, you know, foods that are high in antioxidants,

44:18 like blueberries and stuff are thought to , afford some protection against this.

44:23 , uh but anyway, the point your cells have this protection as

44:26 OK. So what are these things are formed? So, the protective

44:32 uh sod uh which is short for , disme cat and perox. So

44:38 your cells have all three of OK. And so uh oxygen reacts

44:45 um F ad which remember is one those molecules that's in the uh in

44:50 respiration and forming the super oxide Uh And again, this is very

44:57 . OK. And um it'll interact your proteins and it take acids and

45:03 damage. OK. The first step to, this is the nod

45:09 OK? Is to neutralize that into peroxide. OK. Still, still

45:15 but not as much as superoxide. . The net gets neutralized through catalase

45:21 or peroxidase into water, right? is obviously harmless. OK. So

45:29 now, OK. So um so to microbes and living in a world

45:37 there's oxygen. OK. So you have protection against that. And

45:42 really, so how you, how um, determine a microbes response to

45:53 if it's present is through the test gonna see here. OK. So

45:59 medium called fluidly is um, kind a gel like consistency, not,

46:07 solid, like an Avary medium. it has a chemical in there

46:14 I don't know if I even mentioned , but it has a chemical in

46:17 that binds oxygen. OK? And um when you make it,

46:23 of course, auto play with the it and that, that takes all

46:27 air out of the oxygen out of medium. But then as it cools

46:32 , it kind of slowly comes back . But you've got a gel like

46:38 that kind of makes it hard for to diffuse all the way through the

46:43 . And then you also have that that binds up the oxygen. So

46:49 a nutshell, what you're creating is gradient of oxygen high to none to

46:56 , right? That's the net effect this. OK. And so then

47:00 you're gonna do is take that and inoculate this using a wire loop that

47:08 um pass through the whole length of tube, the medium in the

47:14 OK. And what you're basically doing seeing laying cells down the whole length

47:22 the tube. OK. And so you have the cells. Now,

47:29 you're asking OK. Where does growth in this? Ok. Does it

47:34 from cells only that are at the ? Is that only where you see

47:38 ? Does it only occur in the ? Does it only occur at the

47:43 or does it occur throughout? And those patterns, the pattern tells

47:49 kind of what it is in terms its behavior to object. OK.

47:54 so, and it really, and again, it doesn't have to

47:58 the 02 to be able to, be able to survive in it.

48:03 ? You can have an organism that grow here and it's not one that

48:09 oxygen. OK? All has to with the protection with the protective enzymes

48:14 . OK. So um so knowing I think, yeah, here's a

48:24 . OK. So knowing that let's at this, right? So

48:30 interact with 02 is about the does they have protection? OK.

48:33 or no. And remember, you , life is very, we all

48:40 genetically, right? Um It may that, you know, we know

48:47 protective enzymes for air tolerance, but it doesn't have the full, the

48:52 concentration of them, maybe it's missing or two that can produce an

48:57 maybe it's lacking them all together and can produce an effect. So keep

49:01 in mind as you look at OK. So again, this is

49:08 , that Stuart flag black light medium it's gonna when you inoculate, it's

49:13 give you a pattern growth pattern. so here we're looking at uh what

49:20 ABC de likely, likely best guess lower concentration levels of these 02 protective

49:31 or maybe missing one or two, ? So you got, you got

49:37 yeah, radiant in terms of archaea, they have the full,

49:46 blown compliment. They have it They have none. Something in

49:51 So think of that. Oh, yeah, so pick ABC D or

50:00 ? OK. That's your choices. , cool. Let me pause that

50:26 remember your aerobic metabolism, right? you got, if you see growth

50:31 the top, it probably means we see only growth at the

50:38 It probably means this, right? in the middle, it likely means

50:44 and of course, I'm not giving the answer but you know, we'll

50:49 what you do with that information. . Ok. Let's count down

51:01 Uh 43. Ok. Ok. Yeah. Ok. So who,

51:21 picked um who picked e why did pick? E? Uh so.

51:33 . Mhm. You know. Mhm. Right. All the way

51:41 the road, correct. Yeah. it would, it would lack them

51:47 . That's why it's growing down So yeah, it's your e is

51:52 . So um so you got growth here and here. I mean,

52:04 is throughout as well, but if growing up here, that's the highest

52:11 concentration of 02. So you probably have the full protection there.

52:18 Um This guy oxygen is actually toxic it. It will kill those

52:25 Ok? Um This guy is this is ee in the microbial world

52:32 be among the most common types of . Um That's what we call micro

52:37 files. OK. Um They require , their aerobic respire. OK?

52:48 it has to be a concentration of than atmospheric levels. OK? Um

52:53 we'll go through each of these types right now, but let me just

52:58 out one more at you. How can aerobic bacteria live in your

53:02 ? And they do because many of are types that provide, give you

53:07 cavities. OK. So, and , and you're, you're, if

53:11 breathe, you know, through your , obviously, there's oo two in

53:16 . OK. So how are animals in there and causing issues for

53:22 Maybe, maybe they're not. But maybe they are right? Where

53:26 they living at? So you gotta small. OK. So remember in

53:32 mouth, there's all kinds of nooks crannies that they can go into and

53:39 , and remember it's a mixed culture your mouth. So you can have

53:43 types, right? That um can oxygen levels. OK? Um I'm

53:50 , aerobic types uh will use So the environment is like between your

53:55 in your gums, right? Uh provide areas where it can get anaerobic

54:01 um and, and those kind of can begin to produce acidic products,

54:07 and break down your enamel stuff like . Um cause issues like periodontal

54:13 right? So, um anyway, let's look at these five types.

54:20 ? And so we'll get to that in a second. So, um

54:26 . So I break it down kind this way, aerobe anaerobe faculty.

54:32 . So aerobe, of course, a requirement that they use oxygen for

54:36 metabolism. OK? And so those gonna be your obligate Aeros, which

54:40 where you are. OK? And micro aero files. OK. So

54:45 , that's kind of the key point . They're aerobically respiring organisms, they

54:50 have different levels of 02 that they tolerate. OK? And so micro

54:58 something other than, you know, like five or 10% 02 uh is

55:03 of their levels. Um the ana but what's common among those is they

55:12 use oxygen. OK? But you two types, two very different

55:17 OK. So uh the atomic anaerobes tolerate oxygen at all. OK.

55:27 tolerant types. Well, the name of tells you what it is,

55:31 ? Aero tolerant, OK? You tolerate 02. OK? Um And

55:37 can do so because OK. So terms of protection, right? Uh

55:43 Aros, they all have protection to degree or another except the al ana

55:50 , OK? They have no protection those two right. So everything else

55:54 just at different levels. OK? the micro a flow, for

55:57 OK. So, so the aero aro can be a fermenter or an

56:04 aerobic respire. OK? And so um but the key is it doesn't

56:11 oxygen but it has the protection, can just protect it against bad

56:15 OK? And so in facultative basically go either way. OK? And

56:23 um now there is a difference between aro and facultative ape and and that's

56:31 difference here. So this one, one. So they both have growth

56:38 . OK. But there's more growth here compared to the aero tolerant anna

56:48 . So you look at the top sorry at the top, it's more

56:52 gross with the facultative an rope because why can the aero tolerant aerobe respire

57:05 ? No, the recitative aerobe can aerobically, right? It's it does

57:14 right? Can use or not use . So we learned previously, although

57:21 , not necessarily dramatically different, but terms of energy output, but produces

57:25 energy 02 metabolism or anaerobic restoration, respiration or anaerobic respiration, more energy

57:35 , er so that more energy production into more cells, right? More

57:42 growth. Ok. So remember the with a little first with a little

57:48 looking bacterium and it made zillions growth requires energy and so more and more

57:55 , providing more energy, potentially more , right? So that's why you

57:59 the difference up here because the Faculty Manor Road can, can do I

58:04 one hand, so you don't see same level of growth between the

58:09 OK. Um Makes sense or am insane? OK. Right. You

58:16 be, they're not used to exclusive . So um OK. So

58:22 that's your aero tolerance. OK. Any questions about it? All

58:28 So we're gonna do a little bit the 22. OK. So,

58:36 , and really, and if you at the bacterial world and archaea,

58:41 things are this, this and really , there's more of those than there

58:50 aerobic, strict Aeros. Most bacteria are in these other groups.

58:57 Um Think of your, think your what's going on there anaerobically?

59:03 Um All right. So just to remember like with five, just

59:09 section 21 22 just actually it's only . Sorry. Um and I,

59:19 , that reminds me because it's not minor change, but I'm not gonna

59:25 into all the details of this. just put a line through that.

59:33 ? Because some of that is what's 21 and we're not doing 21.

59:38 . So forget that, forget that just 22. OK. Sorry about

59:43 . I cleared this up. So just two. It does talk about

59:49 fixation in 22 but not to the that's covered in 21 and I'm gonna

59:54 of just not worry about it. right. So, uh anyway,

59:59 so let's start here with um hydrologic . So I, we all know

60:05 , I'm sure. Right. Uh results from water that evaporates from

60:11 you know, oceans and lakes and , right. So our concern more

60:16 as the water comes down, precipitation right through, through,

60:25 around and on top of soil, ? The soil of course, is

60:32 matter, right? And water passing it is gonna pick up that organic

60:37 , OK? And so that can a number of implications, obviously,

60:45 by gravity, everything eventually goes into oceans and other bodies of water,

60:51 ? And that that can present some as we'll see, particularly in terms

60:58 of you know, around around rivers and streams and whatnot are gonna be

61:06 facilities, great farms, both you , family type farms and also big

61:12 agriculture, right? And a part that is um fertilizer, right?

61:18 fertilizer. So water runoff can lead , you know, this excess fertilizer

61:24 thrown into waterways, right? And has has an impact as we'll

61:29 it also comes back to metabolism, the the bad effects we see from

61:33 , ok. Um Also through human things, things that humans do,

61:41 ? Um because not just uh excess fertilizer, but pollutants and other

61:48 that companies discharge and whatnot. Uh provide organic materials, the bodies of

61:54 that aren't used to seeing these kinds toxic materials. So it has a

61:59 . OK. So um but of , there's natural processes, right?

62:04 water treatment is a natural process. . Um you're using bacteria basically to

62:10 down your I was gonna say something sounds kind of bad to break down

62:16 stuff. OK. Break down your material. OK. That's in that

62:20 flush down, right? Or otherwise into the uh um water runoff.

62:27 anyway, so this idea of carbon off accelerates microbial respiration, right?

62:35 that's providing, right? The electron donors, right? The organic

62:39 . OK. And so when being aerobic Respi is right? You use

62:45 material, you, you um uh can provide then um nutrients for others

62:54 then um um what I say, , respiration, right? Using

63:06 So one of the things that's so one of the, one of

63:11 sort of hats I wore back in the life was working for a

63:16 that did um we sold products for treatment plants, OK? And one

63:23 the things the waste water treatment plant is to measure the organic content of

63:31 , right? It's an indication of the amount of breakdown that has

63:37 occur to get rid of it. . So bod we call biochemical oxygen

63:42 is basically um seeing how fast oxygen removed from the sample because it directly

63:51 to aerobic respiration. OK. And what you do is so that what

64:00 see over here is a series of in these glass bottles with different water

64:08 , OK? Or other environmental And the black thing here is an

64:14 probe, OK? And so you a measurement uh milligrams per meter typically

64:21 PP MS or what have you and tells you the level of uh a

64:27 measurement is done over time. It's what's called a five day bod

64:32 . And so you measure once a for five days and you see,

64:36 you're seeing a decline in the levels dissolved oxygen in the system.

64:43 And so in terms of bod what does it mean? What's something

64:48 high? Well, sewage, Raw sewage, there's a bod in

64:54 of 600 mg that means raw sewage you add bacteria to it. It'll

65:03 , it has a such an excess nutrients to eat. They'll, they'll

65:08 get rid of oxygen so fast because so saturated with the food source,

65:13 ? And so that very fast rate to a um high bod. All

65:22 . So a for example, here down rapidly because there's so much organic

65:29 present in the water respiration, you oxygen, right? Um reduce it

65:40 water, right? The back right? So remember the diagram you're

65:46 of by now. All right, you see donor, right? 02

65:53 aerobic metabolism running for water. So is what's being consumed in the

65:59 That's what we're measuring. How fast it going away. Ok. And

66:03 , so there's so much of this and excess, then it rapidly goes

66:08 . Right. Very high activity. that equates to a high bod,

66:12 of, of organic material present. ? Has sewage, raw sewage would

66:17 . Ok. So, of then the, the lowest bod sample

66:22 altogether D as in dog, So uh really no, nothing

66:30 there's nothing there. So there's nothing to consume oxygen for, right?

66:33 no respiration going on, right? And so the, so in terms

66:41 numbers, what, what's a, a quote bad number? Well,

66:45 you get to like a water sample has like 5 4 3 mg of

66:52 , um that's endangering life in in that aquatic sample. OK?

66:59 in that, in that body of , OK. Um Saturation,

67:03 So air saturated water. So 8 5, it's not as much as

67:09 might think, ok. But you , it's enough to where, you

67:13 , fish and other wildlife are threatened that point. OK. And so

67:19 so there's areas over the globe, ? Where you have these areas,

67:24 bodies of water that are low, low bod, I'm sorry, have

67:29 low oxygen levels, ok? And areas are, you know, not

67:33 full of lots of aquatic life, ? Kind of devoid of them.

67:39 ? And that comes from, you , really it can be an oil

67:44 . No, that's lots of organic , right? And generate these um

67:48 discharge of pollutants, right? Uh forth. OK. And that's what

67:53 see here. OK. So these zones, zones of hypoxia.

68:00 So again, you have an influx organic material, you have a high

68:06 coming in into the water body of that triggers then lots of heterotrophic aerobic

68:14 . And we know this right. know that activity and that's what breaks

68:19 the material, but also then sucks . Uh Oxygen sucks oxygen out of

68:23 water. Auction levels go down, , go by by, OK?

68:29 low numbers, OK? And other , so in these zones can persist

68:35 quite a while. So you see all along the Gulf coast,

68:39 I'm not sure what depth this is , but it's um but it

68:44 Um I'm not sure today. Um I think today there's still some effects

68:48 this. Uh but also there's other being discharged, right? You go

68:53 the Mississippi River, right? There's kinds of companies that have their business

68:57 the Mississippi River and the Mississippi River a long river, ok? And

69:02 the Missouri River is above it and forth. But lots of, you

69:06 , and knowingly or unknowingly discharging pollutants are high organic material and can create

69:14 dead zones in different parts of the of water. OK. So,

69:22 uh let's just, let's just see we can do with this question.

69:25 , we haven't talked about it but let me just throw it at

69:28 and let's see what we do So UTR application is kind of AAA

69:35 of the processes that I've been alluding here, but it's a stepwise thing

69:41 occurs that does result in a, depletion of oxygen from the water in

69:51 . The um say um let's take look and we'll, we will make

70:02 of this in time. Oh, what I was gonna say.

70:08 while you're reading this um wastewater treatment . So if you're familiar, if

70:15 familiar with your subdivision, wherever you , where you, where you,

70:20 you're on campus and your folks um You'll see you behind a big

70:25 , right? The municipal wastewater right? Um You may have heard

70:32 parents talk about mud taxes, Municipal utility district. That's what funds

70:37 things. Ok. And, but same type of systems exist all over

70:44 country, not just for residential but commercial. Lots of your manufacturing

70:51 have the same things. Ok? , to take their waste, they

70:57 into reduce it. And so when pump out water into rivers and

71:03 it's low bod. All right. um and it's all microbe drive,

71:11 microbial metabolism, right? Ok. if you're not sure about this,

71:17 ok. We're gonna explain it, ? 10. Hm. And so

71:39 reification is really a, begins with thing and then different microbial activities lead

71:46 other things basically. Right? OK. Let's see. Um It

72:09 , it is D it is D in dog and we're gonna see how

72:14 works. OK. So here's a example here. OK. So we've

72:23 a um very common is to have river associated with not getting out of

72:32 yet. Yeah, just so we a pond stream body river, you

72:40 , and adjoining, of course, areas, farms, whatnot and very

72:46 excess fertilizer which is nitrogen and phosphorus is dumped into the stream river.

72:56 because it's not all used. Sitting top quiet. Please just sit tight

73:04 two minutes. Ok. All A runoff occurs, precipitation,

73:11 irrigation. Uh excess is washed off the streams. Uh So now you

73:16 nitrogen phosphorus present. So in the , microbes, these are, these

73:21 nutrients that are when an excess presents , it's jumped on, right?

73:27 these are limited nutrients in, in because if they're available, they're

73:31 But if you have an excess, those that are algae, santa

73:37 these explode in numbers because great as are just give them some co2 and

73:43 , they can't make their own So when there is a, when

73:47 , they rely on microbial activity for , but when you get an influx

73:51 them kind of artificially. Right. they're being dumped on by humans and

73:56 run out, then they explode in . Right. So, sunlight co2

74:02 , uh, uh, water and nutrients and excess nutrients, they blow

74:07 in numbers. Right. So there's mat, they called a bloom.

74:10 it's like a mat covering the top the water. And, uh,

74:15 of course, you can't sustain all growth. And so once this is

74:20 up, right, then they collectively , right? And they fall to

74:25 bottom. OK? But now this a heavily organic source, right?

74:32 who's gonna jump on it? heroic bacteria that are in the

74:37 right? Or down below, jump it, right? And eat that

74:41 materials. Heterotrophic aerobic metabolism, sucking oxygen out of the water,

74:47 And then your fish go like for fish with XS, right? Like

74:53 , they come up to the right? And so uh they don't

74:58 that, right? They, they oxygen. OK. So not just

75:02 , other aquatic life. And so so it's an issue and then of

75:06 , it happens for sure. But it's a step wise thing,

75:10 metabolisms, right? First photosynthesizes then respiration, right? And so um

75:18 e neutral. OK. Questions. you can run for the doors.

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