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00:09 okay. Yeah. Mm hmm. folks, welcome. Uh can everybody

00:21 me? Okay. So I don't the wireless mic, but actually I'm

00:27 of getting used to kind of like when this thing that keep up

00:32 so, so I sent out the this morning, that's the typical kind

00:38 thing. You'll get Mondays and um kind of, this is what

00:44 do. This is what's coming This is what's going on. So

00:47 just make a note of that. Let's see. So this week is

00:53 chapter one monday Wednesday turning point the for turning point. So I'm willing

01:02 um to do it following today's So I figured there'd be a lot

01:07 people that would have, mhm. the clicker and Redford and renewed

01:13 what have you. So I'll upload um tomorrow. Okay. So look

01:19 those on blackboard now, a couple things to let you know, is

01:27 uh well, before I talk about , there may have been a,

01:33 head count on an official role increased a couple, so that maybe some

01:40 have added since last Wednesday when we're . Uh that's you, uh if

01:48 don't have access to blackboard yet, you just like literally just enrolled today

01:52 yesterday or something, um you will access in a day or two,

01:59 a day, but you can always me, I can send you the

02:02 and relevant stuff, but if you wait a day, you'll have access

02:06 everything. Okay. And if if you weren't in class, on

02:11 , we haven't really covered any content is the first time recovering content?

02:15 lecture was kind of the course but regardless of anything you see up

02:23 , hear me say or anyone else that matter um uh is recorded,

02:29 you'll never miss any information. So you can't make it to class,

02:35 always have that resource. Okay? So back to my, I don't

02:41 to talk about was okay? So clicker and mobile app. So um

02:46 it's always it's always 41 for the you have the handheld one, but

02:51 mobile app always make a note of session I. D. That will

02:56 every time. Okay? So but going to put it in one set

03:00 start a class and not not every there's a question. Okay but that

03:04 change lecture lecture. Okay? Um I was mentioning I'm going to upload

03:11 points tomorrow so you can at least that um I'm using my clicker.

03:15 working. I'm seeing my points. . Nothing counts, you know,

03:19 next week. Um But remember that know with the with this attendance policy

03:26 you have a lot of leeway you can miss A number of days

03:31 still still be okay in terms of points. Okay? Remember? And

03:35 because because the attendance clock doesn't really until next week either. Right?

03:39 it's like remember right? 16 out 16 out of 24 days to

03:46 So anyway um Okay so for the subscription status. So if you uh

03:55 this is what this is what I . Okay and that's not what you

03:58 on the blink. So what I is this so uh this is something

04:02 blacked out the names but this is where they when you see numbers,

04:07 have an active account, it's they renewed subscription etcetera. Okay so I'm

04:12 all the points that they have The one with the star. That's

04:17 that's somebody that hazard hazard clicker and app uh is is working. It's

04:26 points okay? But I can't see and I can't see them until whatever

04:32 is, whether it's really has to registered and or license renewed.

04:39 One of one of those combinations. . Once that happens then the asterisks

04:47 become points, whatever the points are are revealed. Okay, so it's

04:51 like you're using clicker, right? and the points aren't going to where

04:56 are and just I just don't know they are yet until like I

04:59 renewed license register. Okay? So and it's also because the uploading the

05:07 all occurs through turning point, I hit a button and it and

05:11 does it. Okay. So but don't they don't transfer points that are

05:17 this with the stars, right? to be you know, fully registered

05:21 renewed okay or unexpired. And so uh that's those are the points that

05:28 that you'll see, okay, the that have yeah, black since

05:35 they'll see their points. But you won't see your points if you're one

05:38 these in this group. Okay? you don't have a thicker yet.

05:43 . So just to make note of . So if you look tomorrow and

05:46 don't see something and you know, right quicker. You know why?

05:50 . So all right. Um, , so talk about that. All

05:58 . Any questions about any kind of syllabus administrative. Okay. So before

06:06 of the lectures, I've condensed on one slide because I'm not gonna go

06:14 these, but you'll see that there's learning objectives that precede each of them

06:20 notes check. Um, so you as kind of a died maybe uh

06:28 you've gone through chapter one and you you, you know, pretty well

06:32 use it as a checklist or And kind do note that the exam

06:37 shoot, exam one reviews ordered. right. You can I would definitely

06:41 consulting that as to what you need know because that's and today we're gonna

06:47 about in terms of kind of the perspective of microbiology. We talked about

06:54 scientists and whatnot. And always get question which of those guys do you

06:58 to know. Right? So always at the exam review sheet. I'm

07:02 holding that in front of me while an example. Okay, so it's

07:05 on that, it won't be on test. Okay. Um okay,

07:10 today, uh we're gonna start with this chapter overall is kind of the

07:19 what why where of Microsoft to become or less just kind of an intro

07:25 of things. We just kind of touch on today and Wednesday on some

07:30 those will go into more detail later the semester. Okay, But today

07:35 this this this week kind of as overview. This kind of the this

07:39 how we define what microbes are. are some of the gray areas in

07:43 of microbiology, uh some historical these kind of things is what we'll

07:48 do this week. Okay. Um the black sort of the first weekly

07:55 comes up Uh this week and it only be on the topics that are

08:02 one topics. Okay, so um this question is from last class,

08:09 don't need to answer this. So talked about this. This is the

08:13 question I think from last lecture. um so by looking at the

08:20 you know, particularly when you look , but here you can eat higher

08:25 energy source. They they informed dormant that survived thousands of years.

08:31 They can breathe using things other than , which right? Um they can

08:37 very fast. These are all features really speaks to the success really of

08:45 , right? They have been around than anybody else on this planet,

08:50 ? And you can only survive for billion years and be successful if only

08:54 you're doing something right? Right. of all that thousands and hundreds of

09:00 species have died since uh since life . So bacteria are and archaea are

09:08 a evolutionary success story. There's reasons that. Okay. And so as

09:14 go through this first unit in we will hear some more some more

09:21 if you will. Right. They have more more of them on it

09:27 on your body than you do your self back. You think about you

09:32 , they've been around humans have been for six million years. They've been

09:38 us the whole time. Alright. they're not just sitting there doing

09:42 Right? So, these microbes and your bodies you could think that as

09:47 of your genome really. All All the chromosomes and all those microbes

09:54 are sitting side by side your skin and your gut cells and your

10:00 you don't have pretty much only have own cells in your brain. You

10:03 have bacteria floating around there. But know, if it's an infection,

10:07 ? But for most of the parts the body, right? So they

10:10 with you and it's not surprising that do lots of things for you many

10:15 apart and we don't even know But um but outside the body there's

10:22 that um that we can't deal with bacteria drive many um aspects of what

10:30 call geochemical cycles. Like the nitrogen the second of nitrogen. Um They're

10:36 for that, you know. what's the big deal about that?

10:40 . Well, a think about one the what are the what are the

10:44 that contain nitrogen? Right. DNA ? Right. So organisms have to

10:49 these things to make these molecules and in different of these kind of

10:54 Elemental cycles particularly bacteria provide that. . And so you may not be

10:59 direct beneficiary of all you are microbes your body. Certainly do that for

11:03 . Um But the fruity reliance requires things like whether you you know

11:09 uh the cattle, right? They grass, they rely on that.

11:15 and of course indirectly you do as . So microbes are in this principle

11:21 that for that reason. Okay. handful of soil, right, billions

11:27 microbes and not right. Um What know about how the basic DNA

11:36 protein synthesis things. We probably paid grant these were all figured out and

11:42 out using bacteria using viruses. Um of course biotechnology use them exploit them

11:51 many different purposes to make different types proteins for us to to um biofuels

11:57 all kinds of things. Okay. um so and you know, even

12:04 we know lots of stuff about microbes in terms of precarious? Only a

12:09 small fraction have we actually and then culture and we'll talk about how you

12:15 this culture and techniques. So there's lot we don't know. There's certainly

12:20 lot we do know. Okay. there's actually ways to study uh superiors

12:26 having actually culture and we'll mention that well. Um So certainly we always

12:33 the attention are the bad boys. ? So um we're all of course

12:41 sick of hearing of covid everyday. . Um and whenever there's other infection

12:47 , right, these big news understandably . But those that are bad are

12:55 our doors but they're small. The ones that are good far outnumber

13:00 ones that are bad. Okay. you know if you learn anything of

13:05 is a couple of things is that you because this course is periods and

13:12 right, 90 10, 85. . We are not gonna spend very

13:19 time on your materials other than for purposes at certain points. Okay.

13:24 hopefully you come out especially going, , I didn't really know bacteria could

13:27 all those things and archaea and how they are important to life on this

13:31 . Okay. And uh and and know we do expect that in the

13:38 quarter of course on medical micro talking diseases and things but we spend much

13:45 time on more of the good stuff call it. Um So so this

13:53 question mark. Why don't you get successful right? To kind of keep

13:59 kind of semi rhetorical questions. Just it in the back of your head

14:03 we're actually gonna go through this unit . And you will see a different

14:09 which will um bring that that that Show us why they are so

14:15 So adaptable. You may think of Just really basic. The reason why

14:22 are so successful would be one. you might put on that list anybody

14:33 have averted the roast metabolism. That's sure. That's why you can find

14:36 in all different parts of the Because they can reside in areas where

14:41 they can metabolize things and use it energy that we can certainly that's

14:46 One more. Yeah, reproduction. not the soul. But one is

14:52 one of the more important things because basic evolution. Right. How do

14:58 how do you measure success revolution of with it? With life? It's

15:03 always reproduction like what's the next generation a successful reproduction is producing offspring?

15:11 those offering and then also successful? are they able to reproduce?

15:16 So that's that's what it's all And so um having a very high

15:22 rate. Okay. Can enable it be in some cases very adaptable.

15:30 bacteria can of course grow humans producing generation let's say every 15, 20

15:39 . Right, approximate. Um In same 20 year time span. Well

15:47 take it too far. Let's Um let's say a bacteria company was

15:51 generations in about 8-12 hours under optimal . Certain strengths It would take us

16:01 plus years to produce 20 generations. ? So the point is you can

16:06 I realized I wasn't gonna change in and arc your populations um because they

16:13 also mutate at a higher rate than do. Alright, mutations accumulate.

16:18 can see all those mutations beneficial or they back? Right. Because it

16:23 be so fast. Right. You be able to find an actor

16:28 Okay. Um so and those you know, beyond just very diverse

16:36 which they have grows very fast and some other things and we'll talk about

16:41 as we go through this unit. . So uh so I kind of

16:47 down yeah, by basic things. , we'll cover these three today.

16:54 , so kind of the basics of you define my life there. And

17:01 much as we'd like to put kind all biological topics into, they fit

17:08 this or that. There's always great . There's always Gerry era and everything

17:14 fits the definition we want, Doesn't mean necessarily conform but we just

17:20 to be aware of how it's a bit different. Okay. And microbes

17:25 no different. Um Obviously they've changed Need to collaborate on that right

17:31 Uh and then some some instrumental microbiologist past your coke window Grodsky had their

17:41 in in developing ways to study the carriers. And then that was like

17:47 springboard to to learn all kinds of stuff in different areas of microbiology as

17:54 see. Okay. And then we'll about the next time we'll talk

18:01 So brodsky was kind of the father microbial ecology if you will. And

18:08 that kind of put certain microbes in context of how important they are recycling

18:13 lot of these elements on earth. kind of what they discovered. Um

18:18 then we'll talk about the classification of . Okay, so but that's for

18:24 time. So what isn't what isn't a micro. Okay, so let's

18:31 if you have you were quicker mobile . Uh This one is shot.

18:39 is this here's my trend micro graph covid? Is this a microbe?

18:50 , let me uh clock here. we go. Okay. Isn't particularly

19:08 questions as we go through the semester have questions of varying degrees of difficulty

19:13 you will. It's always accepted to with your neighbor if you want.

19:19 . That's that's always fine. two heads better than one right or

19:33 . Good to see our headcount in . Okay, 61. Alright

19:42 Okay. Yes. Yes it is microbe. Okay. So viruses are

19:54 they might well that might do occupy a gray area. Right? Gray

20:01 on their lives or are they not ? Are are they lies. Just

20:09 them living things. When would you living things? Mhm. What does

20:17 virus allies? Yeah. And causing ? It's not You want to get

20:26 rash? Mhm. Excellent. that's that's really the just Right.

20:33 so it's for the virus it doesn't the same. So a We always

20:39 viruses a a sailor were not Okay. But they're microbes. Because

20:46 basic definition of microbes you need a to see. Okay. At the

20:50 basic. Okay. But viruses are as you said in the context of

20:57 . Right. And that in itself have to have a host on host

21:01 . And that's when they're reproducing. . That's when they're producing the

21:05 So no obviously argue. You reproduction should be the central one of

21:13 central um parameters of what we call that's alive. Right? And but

21:22 other cells, like viruses rely on host right? For for their

21:29 right? Uh But you can't be on the outside itself. Like you

21:34 outside the cell, they're really kind that suspended animation. If you

21:38 Right? The viruses could be sitting certainly sitting on that on that.

21:42 a door knob. But that that on the door gets elementary.

21:48 There's certainly viruses on there for Um How how long it would be

21:52 varies. Okay. But while in state they're not causing anybody not

22:01 So it's not until you get it inside its host so that it then

22:06 can become alive, so to Okay. So what about um This

22:13 this isn't a clicker question. What this 1? Okay so I blew

22:19 up. Hopefully it's actually a anybody a is that a microbe? You

22:29 a microscope to see it. But one of those things that's kind of

22:31 the in the gray area again. so this is actually a cross section

22:36 tissue from respiratory tract. Okay. those are what they call silly

22:43 Those are kind of cilia that are of projecting we call it. We

22:48 about it at the end of the mucus affiliate er escalate. That's

22:54 That's correct. And that's what keeps uh you know constantly moving, keeping

22:59 particle and things you know getting them of your throat. So you don't

23:02 into your lung. Uh So these don't really consider microbes. Right?

23:08 microbes um have the most part. ? I can't say 100% for everything

23:17 on the whole they are um able survive on your own right? Your

23:23 cells that make up your body. can't survive outside the body.

23:28 They exist as typically exist as part a tissue, right? With others

23:33 them all around uh to be organized organs. Right. Um But microbes

23:41 live on their own generally. Microorganism live reproduce. Have all the properties

23:46 course that all cells have. they can have certain arrangements if the

23:55 maybe part of a larger entity like in chains like streptococcus or clusters like

24:02 staphylococcus or what happened? Right. not uncommon. Um Now the size

24:10 . Right. So you should be you know, viruses can the the

24:17 differences between these things? and so you see here the 1-10 microns.

24:25 your and bacteria viruses are going to certainly much smaller. Okay and again

24:35 these things there is there can be . Right viruses occupied that Uh .02

24:42 kinda gonna be the small end that's of rabies virus are that small.

24:48 On the larger end .9 micron. I heard nanometers that's Ebola is a

24:54 among the large But it's even those are called giant viruses. And these

24:59 be a one uh micron or even than that. Okay, we'll talk

25:04 those in the next year. Um even pro carriers can be on the

25:09 and they can there can be a that's actually smaller than micron but for

25:14 most part they fit within these Okay, now um representative type.

25:20 I will talk more about this next . But you think the microbes are

25:24 to be in in the kingdom's thinking the text on. Right. So

25:32 Park Ista. That's your focus zones allergy. Um, kingdom fungi.

25:40 things like yeast, for example, molds that fit the micro definition.

25:46 , uh, the the pro materials nothing but microbes in there and then

25:52 . Okay. Generally not kingdom, kingdom, plant, kingdom.

25:58 but the other groups. Yes. viruses. Um, so if you

26:05 at the science of ranges, you about, I just mentioned it can

26:08 extremes of sizes within each group of and small. Okay, good.

26:18 a still exists that is that Hey, one nanometer point.

26:26 one. My friend. Could you the cell? That's that small.

27:06 , mm hmm. Okay. Quite . 50. Um, um,

27:20 said no anybody. Why do you no? Yeah, I'm sorry.

27:34 . It's so small that what wouldn't inside it. Yeah. Right.

27:39 that's Yeah. So it's it's too for things like we can see the

27:44 nanometer range is right. They're So what's small molecules adam? So

27:51 water could fit in there no But then again, begin to get

27:55 right lipids proteins and right chromosome. aren't things that are going to fit

28:02 about what anatomy yourself? Um, there were such a thing.

28:07 Uh, that's what viruses. That's know, they rely on a host

28:11 so many functions because their timing and can't fit many of these things into

28:16 into their cell volume. Okay viruses generally contain ribosomes, right? They

28:21 a very small. Do you So as a result you know they

28:26 on the host for a lot of because they are small and they can't

28:29 a lot of these things. Uh But you wouldn't you would not

28:34 that you could find the cell that gonna be that that tiny.

28:37 Just can't fit the things that life in there. Okay. So when

28:42 talk about again, I refer to of some sometimes some of these things

28:46 be contradictory. So um this first cells. Right? So these the

28:55 I mean these are microbes okay. they can on occasion get big uh

29:03 and exceed their normal size. Maybe visible to a degree. Okay.

29:08 it has to do with some kind with with a metabolic feature. So

29:11 it's a metabolic feature that enables them get occasionally get big. Right?

29:15 mean there's a lot of microbe because their state where they haven't done this

29:19 of metabolic process there there, you fit that definition. But and so

29:24 one here called file margarita. Um has a vacuole inside cell that fills

29:31 with gas actually with nitrate. And I'm writing it down but you

29:38 need to worry about doing so. nitrate gas and it uses that.

29:43 talked about the bacteria. There's some can use things out of the oxygen

29:47 breathe. They can use nitrate to . Very common among many anaerobic bacteria

29:53 do that. E coli can do . And um the the uses energy

29:59 ? It's part of electron transfer We'll talk about all that stuff in

30:03 next unit but uses nitrate and at same time it uses sulfur compounds as

30:09 energy source. So it oxidizes sulfur reduces nitrate. It's like we um

30:15 eat sugars and other things and we oxygen in the process right? We

30:21 oxygen, reduced that to water and we fuel the electron transport chain with

30:26 things we eat sugars and proteins and . Alright this guy just does it

30:30 sulfur and with nitrate. Okay. the nitrate gas can fill up an

30:35 role so you can store it and it when it's under starvation conditions.

30:40 ? So it has a store of there and so it will blow up

30:43 basketball too so big that it becomes that. Okay so you'll see this

30:49 of anomalies. Okay the now biofilm not a microbe and but a biofilm

30:58 a nation of millions and millions of that are coming together to form this

31:07 structure. Right? And biofilms as learn are all about a surface whether

31:12 a pipe, whether it's teeth, , plaque and biofilm, shower curtain

31:19 get some grungy stuff on there that's a biofilm. Okay. But it

31:24 a lots of growth of lots of . Okay so we get much bacteria

31:31 together. They come together they form visible structure. Okay. Um the

31:39 animals. So there are certain animals actually this is what's called a water

31:47 . Okay these but these are They are multicellular creatures. Okay this

31:54 to be kind of small. Okay viruses we mentioned viruses are my

32:01 Okay so um it's uh So it just keep these things in mind as

32:08 used to sit and think about. what's the microbe that they certainly most

32:12 going to fit that definition that we microbes but they're gonna be some you

32:16 to make me think think think extra right viruses are 50 category but some

32:20 these other things don't. Okay. is on the plate. Right.

32:25 your lab doing cultural work and in true. Yet A cell that's on

32:32 on a plate. Okay. When begins to divide after about 12 or

32:37 hours you will see a visible colony a plate. Right? Because lots

32:42 those cells are grown important to call . Okay so the colony itself is

32:46 micro but it's made up of certainly of microbes. Okay. Mhm.

32:52 Alright so a little bit about Okay. As it relates to

32:59 Um So the of course unknown UNknowingly how you use the phrase normally or

33:10 for centuries of course we've used microbes for production of different foods, beer

33:16 wine. She's other products. Um know for a large portion of civil

33:25 civilization, we've had to rely on things like wine and beer rather than

33:34 made a lot drinking lots of different beverages are common throughout human history.

33:40 and and and those being the go drinks wine, beer need things like

33:47 rather than what they do. You why what could happen with water that

33:56 have happened with Good Wife, Look the source, what did he get

34:06 ? Right. So water treatment wasn't thing they believe become a thing until

34:16 late 1800s maybe. Okay. Um correlation between O water you can make

34:24 bad and sick. Right. Well found that. Found that out.

34:27 , which is why they switched Okay, let's take this water

34:31 make something different with it. Hence fermented beverages and things like that.

34:37 those fermented beverages, the end products typically acidic and that that in itself

34:44 inhibit growth. Right? So that's of a preservative in a way.

34:48 . So I found that they had luck drinking that than just straight water

34:52 course depends on the source, you with the source of water. But

34:57 but anyway, so it certainly affected that the plague killed uh spanish flu

35:06 the early 19 hundreds and so So no doubt they have had an

35:10 positive and negative. So um so to so then too discovery. So

35:20 Hook and okay so the main difference that people always ask her who was

35:27 and who's second? Right. So Hook was first in terms of the

35:32 to use a microscope. Okay but looked at I called him more of

35:38 macroscopic observer even though I was using microscope because he was looking at like

35:44 like bugs under a microscope like fleas and plant tissues and these kind of

35:50 . Okay was the first to actually what we call microbes. Okay He

35:56 bacteria. He saw different types of means. Okay so he gets credit

36:03 that and he was able to do simply because he had a much more

36:06 microscope 30 x. 2030 X. and had like 10 times that.

36:17 so 200 to 300 X. Ok is what you need to be able

36:21 see bacteria although they will still be that medication but nonetheless um the uh

36:29 call him the described the sometimes the of microbiology in some cases but regardless

36:36 so Discovering them is one thing. ? So you can imagine in the

36:42 right? All kinds of belief back right um that you're now seeing this

36:50 world in front of your eyeballs. up, what are you going to

36:53 at that point right now? I all kinds of strange things, where

36:56 these things come from? Right. and certainly you can see them in

37:02 heaped upon the water and other kind samples, uh not knowing that they're

37:06 here as well right here. uh, so of course you get

37:12 of, well, where these things from, Right? And so this

37:15 where the whole spontaneous generation thing, a part of this now. So

37:20 life those that from non life, ? The generation of life from a

37:28 , non living beginnings. Okay. believe that, you know, almost

37:34 could give rise to life as long you had air, right? There

37:39 what they call that vital force Had to have ever to be able

37:45 do this to create life. And was easy enough really to kind of

37:51 . Um but they called macroscopic life that we can see with our own

37:55 . Right? So in this of course there's no refrigeration,

38:00 You see meat carcasses in butcher just hang right, just hanging,

38:05 , not in cold and also with cold weather, but in the summertime

38:08 can imagine flies everywhere. Okay. they would make these correlations of,

38:14 , flies are hanging around me following meat gave rise and flies right?

38:19 rats scurrying around, You know the of unopened? They they they they

38:26 see that they make the correlation of grain. Let's give rise to

38:30 Right? So these kind of weird in Houston after a big rain we

38:34 frogs jump, right? So we , oh rain rain plus Houston graphic

38:38 frogs. Right? So he's kind crazy correlations. And so um uh

38:44 he would easily enough refuted that with basically he knew that with flies laying

38:52 eggs and meat locker, the growth , with the maggots evolving the

38:58 Okay, we're differentiating the flies. so he just simply put a meat

39:03 with netting net on top Erica get . Right? And you have that

39:09 , but the fines could as long that was maintained. He never saw

39:13 maggots and flies and whatnot inside the . Okay, So he fulfilled the

39:19 of having their friends. But what the flies? And then the meat

39:22 spontaneously pretty flies as they thought it happen. But the meat will

39:28 they need putrefied and rotted the microbes . Okay, so then, so

39:33 the spontaneous generation people said, fine, maybe not from microscopic microbes

39:38 still growing there. All right, can see the meat rotting. So

39:41 that. Okay, and so this where comes in, You can

39:48 Ok, just like broth, You can go back here on

39:54 but you want to make sure that first boil it kill everything that's in

39:58 because you're trying to start life from . Right? So boil that broth

40:02 everything you can see if life can . Right? So we have a

40:07 experiment. Right? So here's where just open, right? So you

40:12 gross. Okay? Um obviously we that it's from contamination of air comes

40:18 . Microbes start growing, but of they said, oh, okay,

40:22 life coming from non Okay, So then we take the same broth

40:27 up and we seal it. well, the problem is you,

40:32 I want you don't get any growth you're not exposing it to the

40:35 but you're not fulfilling the criteria better . Right? So, so spontaneous

40:43 folks. But this account but you're air, that's that's the vital

40:48 right? So here's our past. , so we're gonna take we'll circle

40:53 to so past your He wore a of hats, He was a chemist

41:01 . He of course there was a , bacteriologist. He was a bacterial

41:10 guy. He was a immunologists as , has hands in lots of

41:17 the chemistry and you've um the concept the left hand in this right

41:24 chirality of molecules that was passed yours . But any case, he he

41:30 dipped his hand in micro apology became of the instrumental forces really behind

41:38 And uh his exposure came with the wine industry really? So him being

41:45 , of course branch are created about wine and batches of wine. We're

41:50 bad. So he comes in through what's going on. This is where

41:53 discovers fermentation, right? So to point, it's not that chemical transformations

42:00 uh reacting to get products right. is all a biological it didn't

42:06 It wasn't biology that could ever be part of this. Okay. And

42:10 he was the first to show that he threatened his presentations, right,

42:14 is basically metabolism without a american metabolism oxygen to be specific. Okay.

42:22 so um he saw that as alcohol produced, right? That um over

42:34 the amount of alcohol produced directly correlated the number of cells increasing.

42:41 we will take samples out to look the microscope for examples. Over

42:44 see these cells with increasing in numbers the alcohol content increased correlation. These

42:51 are responsible for the metabolism here for for the dialysis that's going on.

42:58 , So just keep boxing now and will produce alcohol. Okay, Sometimes

43:03 would see vinegar taste to the Okay. He figured out that that

43:09 due to contamination, bacterial contamination producing in products. Okay, so with

43:18 , um bacteria can a pair of , they can produce all kinds of

43:24 uh 124, maybe five carbon chain ass's alcohol's Okay, ethanol beautiful.

43:36 all formic acid, uh acetic appropriate manic acid, all these kind

43:43 small organic acids, alcohols. And even show that um sometimes you could

43:52 could smell the flask and go, , that's uh in analyzing.

43:55 this is this this alcohol. This only produced by this certain species species

44:03 maintaining to their particular end product. . And there was some that were

44:07 mixed acid fermenters are a species with kinds of varieties. Yeah. Brandy

44:14 . Okay. The point is is a we're having transformation of chemicals occurring

44:21 the action of cells. Cells are these processes. Okay, doing the

44:28 and different types can produce different in . Okay, so this is what

44:33 about this germ theory of fermentation. . Um that the the and products

44:42 formed as a result of fermentation directly to the amount of growth occurring and

44:48 certain bacterial types could use certain And it was microbes that were causing

44:55 . It wasn't an a biological process these cases. Okay. This of

44:59 the the the the way to fix problem here then of not having a

45:03 tastes like vinegar. Okay. Is sanitary practices in the production in the

45:11 um uh pasteurization. This is where came from. Okay, pasteurization is

45:17 heating of the product, food or to reduce contamination. Um Now the

45:29 let's go back to spontaneous generation in . So he of course was aware

45:38 in order to satisfy this criteria of people as a generation. You had

45:42 have airplane. Right. So he readies, experiment, experiment head broth

45:51 it but he had a different design his flask okay that swan neck enables

45:58 come in okay but by gravity the that would typically come in here traveling

46:06 travel on dust particles okay dander. these kind of things and so by

46:14 they'll fall and collect here okay right the crook of the neck, okay

46:21 so the broth remains sterile. There's heard that he still has flasks that

46:27 made 100 plus years ago like this are still sterile, okay, haven't

46:33 yet been tipped to decontaminate them. ingenious, simple but ingenious so it

46:39 air to come in satisfying response people unless he attends the task has shown

46:47 to let these contaminants get in or just kind of just cut it,

46:52 the top and the air coming okay the way if you don't do those

46:57 then you will never get you don't attempt okay, it'll stay sterile.

47:03 and so that went a long way kind of convincing these people okay?

47:09 if if if if the broth is either the presence of air as he

47:13 there was no growth occurring out of , okay you have to have cells

47:18 , you know and since then uh this time we also Yeah because of

47:23 work with the wine industry and seeing contamination could come in and cause these

47:28 fermentation to occur. That you know subsequently showed that microorganisms really everywhere.

47:34 ? Counter crops in the air obviously whatnot. So um that knowledge then

47:42 led to development of techniques how to with and culture these things.

47:48 Um so if you look at so exception with pastoral work? Uh

47:57 10 two to repeat some of pastors and he did repeat it. It

48:04 but sometimes it didn't. Okay and he was the discoverer of endo

48:11 Okay so the words for you here we've heard a lot in different

48:19 Okay uh can produce sports. Um certain protozoa wins competitive sports. Ah

48:30 bacterial types of companies sports other than . Okay. And all those spores

48:35 in the context of some sort of plane. Okay. And so but

48:41 end those four and we'll talk more this in chapter four things. The

48:47 is putting the E. N. . O. In front just heightens

48:52 the resistance. Right. Industry are resistant. Right? This makes me

48:56 question earlier. There has been uh those spores that have been found with

49:03 remains 200 million years old and they've able to revive those sports.

49:10 It was a very dormant it's very form of radiation and temperature extremes of

49:16 um uh for periods for a period time. Not definitely but very resistant

49:22 chemicals and things like that. Okay why we have to honestly. So

49:25 have to use an article? It to kill these things. Okay,

49:28 steam in the very high temps will this floor and kill it.

49:32 so in this sport for me that familiar with tetanus botulism, these are

49:38 by endless performers, anthrax another Okay. Um anyway let's talk about

49:45 . Later we found that you have be boiled um uh the medium that

49:54 growth will occur and that's due to presence of endo scores. Okay.

49:59 end those floors with Germany and when temperature came down. Right. So

50:03 ambient temperature that was favorable for the of the fourth of Germany.

50:08 Now they're very quickly. So in this is a typical english for former

50:13 always look like this under the So you'll have so does that look

50:18 this? Okay. Those are what call completely vegetative self times the normal

50:26 set. Okay. These types, very prevalent in this picture are a

50:35 in which endospore formation is occurring. . It's occurring, hasn't yet

50:40 It's occurring what's going on. It's process that takes several hours actually to

50:45 from start to finish. Okay. here you see some that have formed

50:50 free and the release and you see three types but the proportions will vary

50:59 on what state it's in. So so in this state then of

51:08 is there going to be most Okay. Um in the so when

51:14 it when you boil it Right. kill the number of cells with some

51:18 the endless sports will remain Intact and they'll germinate room 10. But then

51:24 have to you have to be repeated of boiling and resting boiling breast

51:31 And and those spores will germinate and will be killed by the next boiling

51:35 . Okay, so eventually he would through a few of these cycles and

51:40 come up at the end with a liquid. Okay, but it's about

51:44 know because it's not all at Right? So not all the end

51:49 sports but all Germany at the same . They do so on their different

51:52 a rate. Okay, so that's you have to do the repeated boiling

51:56 resting bullying, arresting. Eventually get point. So um but again in

52:04 four performers there's only 22 groups in that do this, there's no archaea

52:10 do this. Nothing else. That like this except the groups are don't

52:14 about it. Now the bacillus and are the two um as mentioned,

52:24 has a number of pathogens and tetanus botulism and a number of others.

52:30 . Um Okay. Big questions. can always jump in. Yeah,

52:37 ahead. Okay. Why? And sports is like Yeah. So the

52:47 endospore former will form in those spores it's stressed. A typical way to

52:54 sports uh sport formation in these is starve it. You can start it

52:59 out of food and it wants to to. So survival mode is to

53:02 make it in the sport. Okay typically that's some kind of stress to

53:07 will trigger that formation. I am from the area pretty much it's that

53:24 um that um Mhm. That he that fermentation could vary that he could

53:36 certain species that fermented to certain in . And so you could you could

53:41 identify the type depending on what they . But the biggest thing about implementations

53:47 one is that these chemical transformations were because of microbes. So german Germans

53:55 microphone. So they used to use term germ a lot. Let's do

53:58 sometimes today. So germ think of micro Okay, something about the microbes

54:03 of fermentation isn't the way I think . So it's microbes that are causing

54:07 chemical transformations and the the production of products correlates with the increase in

54:14 Okay, because that that concept of theory is let me ask is supposed

54:22 correlate. Okay let me give you answer. So is there any correlation

54:32 German 3rd fermentation of germ theory of . Despite my blurring out. Wait

54:43 don't want that. Okay so healthy I think even sorry for the graphic

54:59 of a human um So Mhm. between affirmative fermentation. Mhm.

55:19 that's what I figured. That's Right. So what what is the

55:25 What is the correlation between the two ? But here's the corner. So

55:35 microbes were responsible for the production of in the fermentation of producing these in

55:43 , how might that correlate with disease disease or So the transformations we're talking

55:52 in fermentation or organic materials being transformed like glucose to for many too.

56:03 see the gas it right from inorganic . Okay, is that it?

56:09 much that collective effect this disease? these things organic in nature? So

56:18 come in and they transform this right a disease state. Yeah, so

56:26 kind of what began to thinking Okay the directory of disease, we

56:31 these microbes that can transform inorganic materials end products because there's some correlation with

56:38 disease process where these bugs you acquire infectious uh disease bacterium have you?

56:47 the disease stages them transforming the Okay, so that is kind of

56:54 correlation transforming that you're not transforming, reacting to the test tube to end

57:01 . But you know you acquire infection microbes growing you and and induce a

57:06 state which they do. Okay and this led to this is where coke

57:11 in. Okay, so you see the fermentation can that transformation can correlate

57:22 the disease state? In the So it doesn't mean that diseases of

57:26 fermentation. Right? We're just talking the concept of microbes changing these organic

57:31 and enterprise in the body. They're the body into a disease state.

57:37 . Um to cope with the one came up with, I was afraid

57:41 kind of take a stab at linking to a disease. Okay. Hence

57:48 call the germ theory of disease, ? That microbes are responsible for this

57:54 the state. And so he was of rather lucky out of the

57:58 Okay so we're trying to establish that pro X. Is causing disease

58:04 Right, you better be able to it somehow easily in diseased animals and

58:13 was available to him at the Right? Because he didn't have agar

58:18 and all the technique career. We we did he developed them because he

58:24 some issues but initially he didn't have worry about that because anthrax um so

58:31 he's got the country in the country and he saw that there was an

58:34 of anthrax and livestock, it affects , cattle in particular Until Canada

58:39 You want to see what was going . And so it took blood sands

58:43 in the blood he saw that, , those are bacilli in change.

58:51 ? And uh here's this poor form those forms. And so he he

58:58 do some experiments and go, okay me I only see symptoms of disease

59:03 disease in cattle where I see this the blood. I've never seen anthrax

59:10 in cattle ever without this being in blood. That was a pretty easy

59:16 , right? Didn't have didn't even to require culturing anything. Right?

59:20 look under a microscope. Blood Right? Disease versus non disease.

59:24 . So at least I mean that him on the track of of of

59:28 this germ theory of disease. Linking these two things together. And

59:33 um now tuberculosis different story right? tuberculosis is due to mycobacterium tuberculosis.

59:44 smaller organism facilities tend to be on bigger side but regardless um the way

59:53 infects is impacts the lungs. Okay issues do you have to take like

59:59 like the legacy stuff you cough up your lungs and that's what you can

60:04 . Okay so culture is the operative . You have to come out the

60:07 to culture these things. Now can still go under a microscope? It

60:10 be confusing samples of sputum work work uh can be mixed up with other

60:17 through that were there. Okay so only that but the way he didn't

60:22 it, but mycobacterium tuberculosis infects your cells to get inside, get inside

60:26 own cells and hides out, making even harder to find. So he

60:30 a problem. Okay this is where whole specific techniques. Pure culture that

60:37 learn and laugh. Uh He developed along with pasture and others. Okay

60:44 so a way to visualize this organism a way that you can manipulate

60:51 Okay. And so um he used called a solid sucker. He started

60:56 with a potato just a raw potato sliced it and that was his Petri

61:01 with a slice of raw potato. They would do ST ST okay.

61:07 then hess uh primarily developed the the um would extract from seaweed that actually

61:14 agent. And it would serve the for making a solid medium.

61:19 That would remain solid at room Okay and so that was the substrate

61:24 inoculate? Okay so you have to a sample and you have to streak

61:29 out on a plate. Right? where individual colonies fell on the

61:34 individual cells fell on that plate, were going to incubate. They would

61:38 from colonies like you see there and can distinguish between bacteria often form different

61:44 colonies on the plate where you can different types. Okay as you see

61:49 , so this could be a Could be taking example whatever water

61:55 What have you? Okay now the is would would every microbe in your

62:00 grow on that plate, is that possible? Very micro manure sample grow

62:08 that plate, anybody wow what? know why? Because you said oh

62:18 well that's true but the reason why wouldn't grow is because you don't know

62:24 nutritional departments of everything in that So No, no, no media

62:29 ever grow any, every single thing actually photosynthetic, you have types of

62:34 know, maybe I can't even eat you have on that plate.

62:37 So uh so it is restrictive but it it can be useful.

62:44 And so you see uh so from initial plate you would transfer to produce

62:51 culture. Pure cultures is basically only species is on that plate with nothing

62:56 . And that allows you then to further work on the organism. Do

63:01 want to isolate DNA and sequence Do you want to isolate a protein

63:06 work with it? What have So basically as it sounds nowadays to

63:11 ears. But this was huge back the day. Right? So now

63:16 have an application that microbiologists in any of microbiology can find useful.

63:23 So now you can you can study microbes in different ways, right?

63:29 you want to see all of this stop its growth. Okay. Um

63:36 them in a way to accentuate certain . Right? Maybe. So it

63:41 a springboard that led to all kinds development Across many areas of microbiology.

63:47 why they call that period from 1860 through like early 1900s of Golden

63:53 Right, because these techniques were developed enabled a lot of study in different

63:58 . Okay. Um it's a liquid that has a purpose to two different

64:05 . Okay, from solid media, cannot ever hope your culture have a

64:13 solid media, right? You can't a pure culture using only liquid

64:19 Can visualize the types that you can at the microscope, the liquid

64:23 but you can't have a pair of and pick out the different ones,

64:27 ? Because you're gonna look the same a microscope, you have to have

64:31 weight in front of the substrate and different types and that's what the plate

64:35 you. Okay. And as you mentioned, there's there's not everything can

64:40 cultured on a plate like this. few. In the large scheme.

64:45 talk about that next time, but this is, you know, whether

64:49 a patient, this is this is done. Alright. This technique is

64:52 done as basic as it sounds but it works. Um,

65:00 in terms of cost questions. um so it's a framework for establishing

65:10 is causing a certain disease. It's a framework that we have now

65:16 plus years of knowledge since it was , Right? So we know where

65:21 pitfalls may occur. Okay. Because are not all the parts that's necessarily

65:27 fit. But the framework is doesn't that framework doesn't throw it out,

65:32 ? It's still bad and it's what's to this day, but we just

65:37 where things may different, we may to adjust. Okay. But the

65:44 of the method is That it involves separate isolations. Okay, so it

65:52 with that the disease is found only uh you only find a microbe in

65:58 animals. Not in healthy animals. . Um now again, this is

66:03 this is coach postulates. So we're see shortly that there's some some,

66:08 doesn't always fit correctly. Okay. nonetheless, uh only disease animals carry

66:14 micro. Okay. You can then that from them. The isolated microbe

66:20 be uh maintaining pure culture, will inject that into a healthy animal and

66:26 this animal comes up with the same symptoms as previously in these other animals

66:32 you can recover that same organism. you have to separate isolations where you

66:38 the same thing. Okay. And course in science you want to have

66:43 and so it's built in in Okay, so it's pretty good evidence

66:49 this is the cause of agent of . Okay, now here's the exceptions

66:54 the variations if you will. so um asymptomatic carriers, right,

67:01 well aware of that. You can an infectious agent and not have disease

67:08 at all. Alright, yelling with and many other diseases meningitis, but

67:13 have to get vaccinated before before coming school. 50% or more of the

67:20 carries it naturally in their throat. . And so when outbreaks occur it's

67:26 it's one of those people that's an carrier. That's the source.

67:30 so a number of diseases are like . Um This this is victory to

67:36 first postulate. Ok but not not all the time. But for many

67:41 is uh one disease. One One pathogen. One disease.

67:47 He thought there was a 1-1 correlation these two um pneumonia. Perfect

67:54 pneumonia is caused by different microbes. could be fungible. The protozoan type

67:59 causes pneumonia bacterial for sure, viral well. So there's different agents that

68:06 cause pneumonia and true for other types diseases. Okay. One passage in

68:11 disease strip the pockets pathogens causes strep can progress to scarlet fever. Can

68:22 to flesh eating disease. Okay. caused by the same micro.

68:29 Um Cultural cultural. Cool. As am the Lord cultural ability. Can

68:38 culture or not? I can't say you culture many. You can't

68:44 My syphilis since 1900 STD still can't on a plate. Okay. I

68:51 know the nutritional apartments yet. But you know for many of these things

68:55 can't culture that are medically important. can you can you can test with

68:59 genealogical tests, right? You can it. Okay. Uh but

69:05 you know they're not easily culture, have to use a host cell to

69:08 those. So it can it can problematic sometimes. But again were aware

69:13 all these things. Right. So can be uh as we're doing as

69:18 doing the method here. We can aware of. Okay. And may

69:22 conform 100%. So you know but know that we have that notch.

69:28 . Um Okay. So obviously if finding that coke established that okay for

69:37 diseases there is a microbe that's causing . Okay. Now can we control

69:46 unwanted microbes? Right. So how we do that? Well, the

69:50 of vaccines. Right. So unknowingly it used to be a practice in

69:59 of smallpox outbreaks that would occur uh and again that um on how the

70:06 began. But somebody is randomly service the material from smallpox body Iraq and

70:16 postures contain active virus. Right? someone had the idea can we have

70:20 description that healthy person? Right. person ended being the music. Of

70:25 if they didn't die from smallpox. . Because you're actually giving them live

70:29 . Okay. They did find and often not that they survived their immune

70:36 know why. Okay but then Jenner of refined process. Bye. Using

70:45 variation of small pox called cow Okay so cowpox um it's very

70:53 Okay but it is different enough. cause disease. Okay. In

70:57 Okay. But it does elicit the response. Okay so it's much safer

71:02 . So attenuation. Attenuation is to to treat the agent. So it

71:09 it doesn't cause disease but it will the immune system. Right? So

71:14 the goal of this. Okay. so we now know of course that

71:19 all about um antigens, right? and antibodies one of your primary response

71:26 Okay. Um So the aging so can attenuate by chemically treating heat treating

71:33 test your day. So fowl cholera a disease uh in large scale chicken

71:42 , right, chickens can come down us. He found if he had

71:45 had the actually had the pathogen that on the plate and he accidentally left

71:49 out of the plate sitting for like weeks or something like that. And

71:53 aging kind of made it less variable nonetheless. Okay, so there's different

72:00 to do this. But the thing the pathogens in your body,

72:05 Could be a bacterium. Could be virus. Could be protozoan. Could

72:08 other things. Okay. But you they have indians right chemicals often proteins

72:20 their surfaces that your body will recognize produce immune response. And they do

72:25 through the production of antibodies. And so anybody find and then that

72:32 can bring about a number of different . We'll talk about that later.

72:36 the bottom line is to get rid them obviously. Okay. And so

72:41 , why was cowpox effective as a ? Even though it wasn't smallpox because

72:49 similar. It's all about this. here. This binding Yeah, that

72:56 is all protein and protein antibody binding typically protein engine. Not always but

73:04 about that if you can make that similar then you'll still get the binding

73:08 . So smallpox cowpox very similar. get the same result um What we

73:13 a cross reaction cross reacting antibodies. so um so the uh before I

73:24 to that um any questions? Okay so this is one of my

73:33 pet peeves always has been. Okay let me see how you guys answer

73:37 . Okay so there's three or two we have to see are they both

73:42 or they're both wrong? Okay so mouthwash this morning after brushing my

73:48 sterilize my throat and mouthwash this morning brushing my teeth and disinfected my throat

73:56 . And B. Neither par Both are correct sterilizer and in this

74:07 sterilize doesn't mean you can't have kids . Business Good. Okay. Alright

74:51 see. Oh I got to bees there jesus. Mhm. See sorry

75:09 that re answer real quick dumb. one more time sorry but now it's

75:23 gonna even though it's totally it's totally up. I just realized even when

75:28 data comes up it's gonna be all . Um Just show hands. He

75:33 are you supposed to write? They're wrong what should it be? Uh

75:42 . Yeah. Yeah but what what the correct terminology? What should you

75:50 ? Okay okay so if we take what does I had some this morning

75:54 uh what's what's the mouthwash brand that's popular? Mr Right so I had

76:01 mystery this morning. It says right the model. Does anybody know what

76:05 says in the model? This arena a an except so any sepsis.

76:11 you don't have to read word a bit. I have mouthwash this morning

76:13 brushing my teeth. The mouthwash, was an antiseptic on my throat.

76:18 like that. Right antiseptic is living . You can drink bleach no matter

76:23 some people tell you uh lead to disinfectant going for inanimate objects.

76:30 countertops walls, it's much more stronger an antiseptic sterilized means you killed

76:37 You sterilize your throat. You wouldn't a throat because you would have you

76:40 have killed every means killing every cell and endless support. No.

76:47 No life. Okay so um anyway I I keep always use sterilized the

76:54 way and disaffection. So uh we're visit this in chapter five. But

76:59 you guys gotta go to lab if in lab so I'm gonna stop here

77:04 we'll finish it up uh Wednesday. folks and I'll post these quicker points

77:12 . So take a look. I know. Okay I ask you a

77:56

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