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00:10 testing testing. Okay. Welcome Uh if you just enrolled in the

00:20 and you just showed up today, material is relevant to you. Um

00:29 if that is you and you enroll managed to be able to uh you

00:36 have access to backward for a couple days. Um Maybe a day.

00:41 can always email me. I can to a syllabus. Um But uh

00:47 there anybody here that's this is day for them? Never heard of this

00:51 . I've never seen you before. got one. Okay so do

00:58 All right. Um and for you everything in here you're seeing and hearing

01:04 all recorded so you can see what missed on Tuesday? Okay. It's

01:11 on blackboard, you find it Um Okay clickers mentioned about that

01:22 Okay so just take note of the system. Okay um Make note of

01:33 session. I didn't remember. It's just for just for fun disease

01:39 the for the first couple of weeks and uh yeah so session I.

01:47 . Right. That's if you have mobile app. Okay Just gotta punching

01:50 once. Um We have we have few questions today. So what

01:56 So remember just kind to reiterate this clicker. Mobile apps you're using Or

02:03 that that 5% right, remember it's low bar but it's 5% to get

02:08 to come to pass some of the at least to understand we're still in

02:12 midst of a pandemic. Um They're come across is supposed to be on

02:18 downward slope here by the end of month, beginning of february. Um

02:24 we'll see but nonetheless so not saying um the clock doesn't even take on

02:29 attendance days until until again in the period, right? So uh kind

02:36 come as you are if you will the first couple of weeks uh Let's

02:41 what else is there? Oh this the other thing, So check your

02:46 status. Okay, renew if So what I see on my end

02:52 this okay? It was just an . Uh so if you have a

02:57 clicker you'll see something like this, have points for the 19th which is

03:02 and Blah Blah Blah Blah. Um if you have a clipper or

03:07 app but it's not. So this here has a completely active license,

03:12 seeing everything okay? But the person has an active app for clicker handle

03:21 and they respond right? It's it's right? But there's no data revealed

03:29 , that's because this person has an has a functioning clicker slash app but

03:36 a licensed. Okay. So if you and you're using your clicker,

03:42 not seeing points. The points are there right? Uh And so these

03:47 will be numbers once the prescription is . Okay so this is what I

03:53 as well, so if I clicked this person here. Alright. Stars

03:57 numbers I'd see this but this one not have an active system.

04:01 So that's you and you're wondering where's points there? Actually there, it's

04:06 , what's behind door? Number one of thing. So the door will

04:09 revealed once the subscriptions activated. So the points are being logged in

04:14 accumulated. Just not revealed to Okay, So again, there's still

04:21 to do this, so plenty of to get this going. Um What

04:26 ? And I have the the the software has the ability for me to

04:31 for these for to send an Just hit a button and it goes

04:35 everybody who doesn't have a subscription or . It's just reminding. So when

04:42 see those things, that's that's how doing it? Okay. Alright.

04:48 it for housekeeping stuff. Let's call questions about it. Okay.

04:54 So it's not the changes every Yeah. So this will be up

05:00 . That would be up there at beginning. So just put it

05:02 put it in every session. But the but the channel number.

05:07 you have the handheld deles those, 41 forever. Okay. So you

05:13 have to keep changing those unless the reason that changes if you're another class

05:18 uses a different channel. Okay. then you have to change it

05:21 Okay. Anything else? Okay. another way that we can see the

05:25 . Yeah, I'm going to do . I'm going to upload those.

05:28 even though um yeah you want to that everything's functioning on your end.

05:33 yeah, I'll do that. And then when on the first or before

05:39 first, I'm gonna erase all that because doesn't count anyway, but then

05:42 least you'll know, Yeah, it's for me. So yeah, I'll

05:45 that. Sure. Um Maybe the . Okay. Alright, so I

05:54 we got about Mhm. About 40% , something like that I guess.

06:01 . Anyway, just curious. Um , so as if you haven't already

06:07 at that they're proceeding every every one these electric notes for each of the

06:16 is are these learning objectives? And don't go through this point by

06:19 But for you it's like um may ask what what what is this

06:24 Well, it's the kind of if mastered the chakra and material, you

06:30 be able to go for these points know them. Okay, so kind

06:36 think about a checklist for yourself. . And we'll go through all these

06:39 course uh this today and next next . But that's that's kind of what

06:45 thing is these things are for. , so let's start with so today

06:51 next time we're covering kind of the of this as the basics of

06:59 Okay, um overview somewhat the things talking about today at some point later

07:08 the semester as we go through, go into more details, but now

07:11 kind of like here's here's what here's microbes are, here's what they can

07:16 . Um Here's something to classify Uh Here's some historical perspective here is

07:22 they came from. Not not all it in great detail because again we

07:27 each of these things in greater details the semester. But you know kind

07:31 a way to kickstart and kind of your heading to the microbiology mode.

07:38 . So um and so we looked this is my favorite question. It

07:44 last time. But I just to you know if you look at this

07:49 go what does this really mean? means that bacteria I tend to use

07:57 when I say bacteria I'm always including in that I don't always say both

08:03 . But the precariousness probably maritima should because there's two groups that archaea and

08:10 . I don't have it. I I just try to say bacteria all

08:13 time. So just specifically is suffering . But when I say I'm referring

08:18 all pro materials but they're very diverse speaking right, they have a lot

08:25 features that we have enabled them to super successful right there? There they

08:32 the oldest life forms on earth. ? The first ones to arrive on

08:36 planet. Okay they've been with us us humans for about six million

08:42 Okay so we're all well aware of microbiota and the bacteria in and on

08:48 bodies. And they've been with us since we evolved. Right? So

08:54 day you find something out more about part of your body. They are

08:59 associated with you obviously. Um To it's like there's a lot of people

09:04 germophobic, you can't be a german you're covered with. Okay they disinfect

09:09 so they've involved with you and they have a purpose and they do alright

09:15 that lots and lots of different Um And we'll touch on some of

09:20 things throughout the semester. Okay so so again we have lots of different

09:27 that that as you carry you can't and then a lot of it has

09:31 do with why they're so successful. and here's some more stuff right?

09:37 will touch on right? A handful soil. Good Lord contains billions of

09:43 and they're both fungal uh protozoa all carry outs. Um This term you

09:50 see associated particularly with bacteria and archaea ubiquitous, right? Found everywhere.

09:57 what means found literally almost every part the planet our Kia tend to be

10:02 into the group extremo files. You'll them on the upper ranges of temperature

10:08 lower ranges. Um Extremes of ph different types of of extreme environments that

10:18 often found. So we see the guys there's bacteria that can live in

10:25 environment 100 degrees boiling water. Um the uh benefit to us is

10:33 fold right from things are kind of in terms of producing uh different types

10:39 products for us, biofuels production, treatment, that's all about microbes doing

10:47 to supply clean drinking water, um sacrifices that love cold temperatures living in

10:55 the arctic and arctic environments. Just microbiome, all the bugs that are

11:00 you and then you um the binoculars related to biotechnology and and all that

11:09 produced using microbes to produce the very of chemicals and enzymes for us for

11:14 uses. Um The uh of course the back now, the bad is

11:20 gets all the publicity like most of disease. Right. No, no

11:25 the plague killed millions right back in middle ages. Um what we're going

11:32 have been going through for the past years. Right? Of course,

11:35 course killed lots of people too. , um but the ones that are

11:40 bad guys are certainly out number way by the good ones. Okay,

11:49 hopefully one thing you need to Here you go, wow, I

11:52 know bacteria could do so much that there, you know, we literally

11:56 depending on them for our lives, you'll see, okay, from the

12:01 standpoint. And so um the and can see the contributions right contribution to

12:07 first oxygen, right? They're the that first put options into the environment

12:11 the first place. Um 2.5 billion ago, um the ability to use

12:19 other than oxygen. Right. So of course we're used to being anaerobic

12:26 breathing entities like many eukaryotes are. you you could argue that anaerobic activity

12:36 able to live without oxygen is probably prevalent among life on earth. When

12:41 consider bacteria that can use anarchy. . Uh even on your own body

12:46 in your own body. So um we're gonna go through throughout the

12:52 See the different types of things they do. Right? And how how

12:58 it is for us mentioning the nitrogen up here right there, which we'll

13:05 about it during the semester, that what plants absolutely require, That plants

13:15 great life forms, right? Getting sun and some water and they'll do

13:19 things from SEO to write. But can't make things like phosphorus and

13:26 Right? They need it supplied by . Right? So they provide these

13:30 that are required. And we all just from basic ecology. Right?

13:35 for any ecosystem of your plants. ? In aquatic systems of allergy.

13:40 so those can require his minerals that providing. And the life cycle is

13:45 driven by bacteria of different types and different metabolism. So um you always

13:51 that even if you are you maintain as a strict carnivore plants.

13:57 Even you rely on this because you you eat cows. Right. Others

14:04 on their plantings. Right? So all it all fits together.

14:10 so um looking at and so this so this is kind of semi

14:19 right? I'm not gonna spend just of put it back your head.

14:24 why are they so successful? Why they found everywhere? Why have they

14:28 know, arguably been Life's biggest success 6 uh more than Almost four billion

14:38 Longer than anything else. And so we go and we'll see how different

14:44 we talked about in Chapter three. 4. Actually answer this check um

14:52 know, I think one reason just just for now that's one reason why

14:56 may be so successful. So live fast. That's probably number

15:01 Right, So very rapid growth So if um you measure evolution in

15:10 of reproduction, right? How successful the osprey? Okay. They survived

15:15 are able to be produced on their . Might produce the next generation.

15:20 us. That takes a generation for is 20 years. Right. So

15:29 bacteria, The generation will be 15 . Okay, so it can produce

15:35 generations. Isen't a day where that take us 500 years. I think

15:41 figured that one time. Okay, you can see they can you can

15:47 mutations and then among offspring of the of those may survive better. And

15:51 it can all happen in real Almost. Okay. Because they grow

15:54 fast and so, and so uh diverse metabolism. They can adapt to

16:01 situations. So it's a okay. not, I'm not gonna say more

16:04 that, but I'm gonna bring this now and again during the semester about

16:08 they're so adaptable and successful. Um Alright, so I kind of

16:15 this this chapter up into these kind five themes. Okay, I kind

16:20 sat down looking, okay, what the kind of the five things that

16:24 things we're looking at here in this ? Right. So we'll cover these

16:26 today, which is the definition of should know what that is.

16:30 And what what maybe remember as much you like every kind of thing in

16:37 to be, you know, either or that. And then in between

16:41 lots of gray areas, right? can never really pigeonhole things in biology

16:46 as being only this way. And microbes are no exception,

16:51 Uh for the most part we can them and we know what they

16:55 But there's always something that's kind of the gray area and we'll look at

16:59 here in a second. Um, I just mentioned, right, knowingly

17:03 unknowingly my microbes had changed district, didn't back in the middle ages when

17:10 black plague was raging. I had idea what was causing. Of

17:15 Okay. But they had ideas like ideas of what we're calling it.

17:22 . But but certainly they changed Um pasture coke Winograd ski.

17:30 And others will mention developed the ways work with my coach. That was

17:35 . Okay. How did it work that? Because that's a springboard.

17:40 just to get the development of culture . If your lab you learn these

17:46 okay. They seem very basic. . Nowadays but development of those techniques

17:53 spring boarded research into all areas of , Microbiology and about technology. Everything

18:01 . And these these basic tech culturing . Okay um the we'll mention next

18:09 we come back we'll talk a little metabolic capabilities and microbes. And with

18:16 that benefits working told and then a bit about the diversity of forms.

18:21 ? So that with everything in biology we always have to come down to

18:26 some point. How do we how how are these related to each

18:30 How do they how do we put into different groups? Classification taxonomy.

18:35 we look at that with microbes next . Okay so let's uh look at

18:43 first theme here. Okay, so here is just making a polling

18:50 Can you test your clickers out here's micro graph of Covid? Okay.

18:56 this considered in microbes? Okay, that true? There's a timer.

19:19 put a timer on it just to things up a little bit but that's

19:24 the way Covid and micro. Uh . Okay let's see. Okay.

19:51 so we've got so many 6% Yes that is correct. It is

19:56 microbe. Okay. Um what about 1? I didn't blow it up

20:02 enough probably. But it's a uh mean this is a issue. Think

20:11 the track. So you're syndicated cells see there. Is that a

20:19 Why is it not a micro? it isn't a single celled organism?

20:25 it's kind of right. Right. it's um so microbes and just flipped

20:32 . So microbes are typically and then course we'll say they're entities typically who's

20:37 aren't celled But um hey Tiffany definitely have to have a microscope to see

20:44 done. Right. Why you need to see the epithelial cells.

20:49 But um epidemic yourselves, you could take the latino cells put out nature

20:55 say go for it survive live. . They won't right cells to that

21:00 of your that are part of a like tissues organs. These are highly

21:05 requirements. They are meant to work other cells as a tissue or an

21:12 . Um They can't survive on their . We don't typically call things like

21:16 cells or neurons microorganisms. Okay they're that are part of a larger

21:24 A tissue or organ or what have ? Um They couldn't survive on their

21:29 . Okay but microbes. Microorganisms. bacteria. Archaea algae zones. Um

21:41 molds, yeasts. These are Okay um They of course will have

21:48 . the exception here is the right, viruses are considered microbes.

21:51 need a uh they are they alive not alive? It's a question.

22:00 . Um We'll get to that. for those that so viruses or microbes

22:06 no mistake. But um those so . Okay some are some art.

22:14 ? Those are the parts of tissues organs are not considered microbes. Um

22:20 what I just the ones I just off in those categories. You're your

22:26 . Archaea Pro zones, algae, , certain other molds. These are

22:35 microbes. They're gonna fit into those . And viruses. Okay. They

22:39 have arrangements they're not all gonna be cells single celled but they can be

22:43 arrangements. Chains or clusters. Um size ranges. Right. So

22:49 should have the size. And when talking about three categories here.

22:58 And viruses. Right. And there a definite size differences between them viruses

23:04 the and of course Prepace it in middle of 1 - 10 microns.

23:10 Eukaryotes bigger. And each is in particular science range because of what they

23:20 note. And I'll come back to in a second. Okay so viruses

23:26 generally on the one microns or Okay that's about 20 17 nm is

23:35 of the lower end size. Okay even viruses have exceptions will see that

23:40 are what are called giant viruses that be over Micronics size. Okay but

23:46 there's not a lot of them. there is a group that's called the

23:49 viruses like that. So like I , every group there's always kind of

23:54 things like pie gray areas. Um, so this is the group's

24:02 just mentioned. Okay. That include microbes. Um so notice what's

24:08 Right? Kingdom. Animal leah Animals. These are not microbes.

24:14 , kingdom plant. I planted There are no microbes in there.

24:19 . Um, Alright. So I to fit itself exists as one nanometer

24:31 . Could you have something that Right. Answing that one. We

24:37 the nope. Not that there we . Mm hmm. Side cell.

25:17 . Um why couldn't you have a that size? Yeah. It has

25:24 do with the components that are Right. So the opponents are bigger

25:29 anatomy like. So it's it's something uh you know better bigger than.

25:39 , those two synthesize protein, it's handed proteins, lipids. These are

25:47 signs that are beyond fanatic. Not to sell us below in this range

25:56 not going to happen because it would able to contain the things that life

26:01 . Alright. The molecules it Uh Which also though explaining why viruses

26:08 on the small and okay. Because don't actually can tangle. Alright.

26:14 actually can take very good have a of a smaller genome. Um And

26:23 hey, and they have a few along with it. Okay. So

26:27 themselves are kind of limited in what can do because they can't carry a

26:31 of stuff to make to do a of their own functions. Which is

26:36 they rely on a host. The are tied to having a host to

26:41 their functions and to replicate. So that that goes into the question

26:46 are viruses alive or not alive. . Which will mention here again.

26:52 here is some kind of um some the things that may be contradictory talking

26:56 microbes. So supersized sets. So this organism style margarita namibians is

27:04 a bad trip. It's a it a microbe. Okay by definition but

27:10 can blow up to a bigger That's not in the small size range

27:19 a pro carrot. Okay. And can blow up those size because of

27:23 type of metabolism. They they're in road. They don't use oxygen.

27:28 they actually use Mycogen trade specifically to with. Right? So those are

27:36 use something other than oxygen to breathe . And they can use nitrate.

27:41 , nitrogen gas and they will fill sack up there just vacuole that fills

27:45 with gas and that allows them to get energy from respiration. And it

27:53 the little yellow got you see in are sulfur grandma. They used sulfur

27:58 an energy source. And they've inspired nitrate we can eat you can eat

28:05 . Right? The candy bar Which of sugar. Right? And we

28:09 using oxygen. Alright. Well they solar compounds and responded using nitrate and

28:15 gas fills up and they can use as a store for energy.

28:19 But it blows up so much it almost visible to the naked eye.

28:23 ? But the species itself is still micro but it has this unusual

28:28 Okay. Uh You can look at microbial community. Think about colony on

28:34 silver plate, right? That's visible the naked eye. But it's made

28:39 of billions of microbes. Right? colonies are microbe but the micro become

28:45 become visible when it collects together with of other rabbits population to form a

28:53 entity. And biofilms are also similarly represent a lot of growth.

28:59 And so much growth that they become film. Alright, on surfaces.

29:05 biofilms are all about surfaces. Whether a pipe of some sort teeth form

29:12 some plaque. All right. Um curtain may get some stuff on

29:17 So it's all about services but it lots of growth and lots of becomes

29:23 at that point. Right? Um I mentioned before, cells comprising

29:28 These are not microbes, skin liver cells, etcetera. Uh micro

29:34 . You come across those but those multicellular animals do not microbes.

29:40 Um Water bear. Just one of you may have heard of? Um

29:46 . Got not microbes. So So it is. So what is

29:51 microbe is a bias. Okay. super sized cell that margarita is a

29:57 but just on occasion it can blow into this sack that becomes visible.

30:01 mean it's still on a micro. has this that's the thing. Everybody's

30:04 fit super rudely. But you just keep that in mind. Okay you

30:08 be a micro but sometimes it blows because the gas for that one and

30:12 visible right? But it's still like the microbe. Okay. But biofilms

30:17 just collections of cells that masks so they become the film becomes visible.

30:23 . The itself is made up of . Okay. But they say they're

30:29 . They're not going to be microbes ? There were animals there. Multicellular

30:33 and viruses are considered microbes. But there are the unique form of

30:43 . Air quotes for those that are on the recording and not seeing ah

30:53 my life. What are they like do we know they're alive? That

31:03 into life was there? But yeah it's it's inside of the post.

31:11 how do you know? But how you know that? Yeah what'd you

31:22 ? You can find it through testing . But I kind of I guess

31:26 your your manifestation of oh yeah I've Covid it's gonna be symptoms of some

31:34 of dizzy. I have fever. have this I have that right.

31:38 kind of signs that you may have faction. Yeah. You can sort

31:42 take test test test for the president . That's what the pcR test

31:48 Um So um but yeah, replication viruses alive, right? When it's

31:57 of a host and replicate because that's more of us are being made,

32:01 ? When it's outside the host and affecting a host, then that's kind

32:06 the suspended animation part I guess you'd . Okay, it's gonna be sitting

32:10 the door over there. Alright. viruses are sitting on the door knob

32:14 there, you know and and doing . They can survive that way for

32:20 period of time class. So uh explore all my viruses in the next

32:26 the next unit. Okay. Um , the next couple of things we'll

32:34 go over uh how might have changed pasturing. Grodsky, not Wojnarowski so

32:42 . That's that's we're talking about him time. He's kind of the uh

32:47 the role of microbial ecology. Um We'll talk about past your and

32:53 here in the context of uh medical and a couple other things. So

33:00 we're well aware of the impact of friends on history. We've used microbes

33:09 really for a long time to produce and beer right through different water was

33:18 a thing for a long time. ? So that's why it was very

33:22 with wine and beer because they contained that would inhibit growth. Right?

33:28 . So wine and beer drinking was thing and variations of that like meat

33:34 another fermented drinks and foods and um certainly production using micro using use

33:43 So um but certainly on the bad of course the disease of devastated populations

33:51 not just plague but TB and and and so forth. Um But of

33:58 being able to a first discovered them and then be able to work with

34:03 developed techniques has of course been instrumental terms of us understanding basic processes of

34:12 like replication and and um working Right. These kind of things we

34:19 that for granted. You know these all worked out in in bacterial models

34:24 using viruses as well. Um So we've of course used them for lots

34:31 different things. Both commercially and and basic research. So it all goes

34:37 to hooked and then lay one hook ? The ones that I think he

34:42 to have something that would magnify. if you're gonna see this invisible microbial

34:48 , you better be able to The only way to see it.

34:51 right. And um hook. The difference between the two. Well the

34:58 was first used in Mexico um He really going with his dad at the

35:06 view of things like insects and plants different types of tissues like that because

35:14 didn't have very powerful microscope 2030 It's not it's not that powerful.

35:20 um so many good things like sleeves tree bark tissue, that's where the

35:27 comes in. You can see little that made up the the dead dead

35:31 tissue which is bark. And you it a little chamber cells. That's

35:35 the work comes from. But microscope 10 X. More powerful than hooks

35:46 that enabled to see factor another And uh surprisingly he was able to

35:54 this with this very unsophisticated microscope, is this thing right here. Apparently

36:00 some expert, I have nothing about lenses, but apparently he was like

36:06 expert in that. And he was secretive about it. He didn't tell

36:10 about how about his anything but his lenses and many drawings. And uh

36:18 know, of course he's heard among bacteria. He was drawing as you

36:23 there on the Corner. So now can imagine we're talking 1600s. So

36:30 previously um Invisible world. Right? think you're measure on a microscope for

36:40 Because of water? Some water samples . And I was saying these things

36:43 around. All right. You can , you know, you probably fell

36:46 the stool. Right? And what this? Okay? Because just think

36:50 the times they're in right, There a lot of leaving winches and all

36:55 of crazy stuff. Right? So where did something like this come from

37:01 in these pond water or whatever the was. Okay, so of course

37:07 all kinds of crazy beliefs about this leads to this idea of spontaneous generation

37:14 , that life can arise from Okay. And uh for the next

37:21 decades, if not centuries, you , there were those that said,

37:26 , is this really a thing or know, it's true, It's

37:31 Or are people crazy? Okay, in hands, people that will come

37:36 and try to experiment, right? science to to say it's just

37:42 crazy, right, anytime. And um and so then it became a

37:48 between macroscopic life and microscopic life. ? So during this time, refrigeration

37:57 carcasses, carcasses, hanging flies would around it eventually. Okay. And

38:03 the idea goes, oh, meet gives rise to the flies,

38:06 And so of course that I meet maggots, Right? So it's that's

38:16 , but when you're ready, he class, this little kind of can

38:24 to it that you never saw You never said who flies emerge.

38:29 . And and air was part was to come in as well.

38:33 So flies never emerged from that Um and so Okay, Alright,

38:40 . Alright, so it doesn't so generation doesn't apply to big life,

38:45 ? Microbes were discovered a different Okay, And so spelling design for

38:52 to see there. Alright. Either , right. To get the boiler

38:56 and kill what's in there right now set up the central scenario where oh

38:59 life comes from non life now because killed everything by boiling it.

39:06 So it's my page generators generation folks yep, there you go. Have

39:13 areas like the magic force areas like vital source, you need, anything

39:18 give rise to life. I wanted fight here. Yeah. So he

39:25 , okay, well let me, if you sealed it, you wouldn't

39:30 across, right? No, doesn't work right? And you're wrong,

39:37 generation was allowed to happen and they 02 in there. Okay. Past

39:43 comes along where you finally put this rest right? That it's not spontaneous

39:51 causing gross. Okay, it's microbes around in the air, they're

39:58 you know, in contaminated surfaces and . Okay. And he eventually showed

40:04 . All right, we'll come we'll around the back of that. But

40:07 a couple of things about pasture. . Um He uh taking chemistry or

40:15 he's the one that I came up the the chirality of molecules right?

40:21 left handed and right handed. That that was passed your But of course

40:26 uh probably one of the most famous of all the time, but I

40:32 if your background is probably certainly well so uh he studied fermentation which is

40:41 production of in that day production of beer. So french people are very

40:49 , wine and to this day, , don't mess with wine.

40:54 And so in the process they would batches that were off tasting what's going

41:01 with this, Right, french wine not tasting good, It's not it's

41:05 . Okay, what's going on? here comes um that juror.

41:10 Sometimes gas. Yeah. And that's if you never bring a wine

41:18 it shouldn't taste like vinegar. so they're going, what's up with

41:23 ? Right. And so he studies . And so at this point is

41:30 um there's no idea that chemical transformations ? Would occur through um anything but

41:39 a biological process, right? You a reaction to a bee, you

41:44 products and see right all through chemical . Right. So he was the

41:49 to show that it's actually life that facilitating this process. It's catalyzing this

41:57 process. Okay. First to see . And um and so he looked

42:03 fermentation which are by definition but chemical that don't evolve oxygen. Okay,

42:12 is not a part of the And so they and aerobically called.

42:19 . And so in this, you , basic terms of processes grapes,

42:25 . Are we source of the sugar ? Right. So it's eating.

42:30 . So you need to get it in the process produced uh alcohol that's

42:36 wine? Okay. And he would at this under the microscope samples.

42:43 you see that the levels of alcohol ? Equated with it's increasing growth.

42:51 it's more self through alcohol content Okay, so they were fermented producing

42:58 problem, you can see the growth yeast cells accompanied this. Okay,

43:05 in batches where it was off So we see the gas information.

43:10 was due to contamination. Right, contaminating the source. Okay. And

43:18 back here you can do all different of limitations. Not all many,

43:23 different types of fermentation producing, producing acid, formic acid, butin all

43:32 among others. So all kinds of chain fatty acids and alcohols.

43:38 She studied he found different different fermentation that would produce different end products.

43:45 even he could even grow them and , okay, smell it. Oh

43:50 , this is the one that produces the one that produces this one.

43:54 we could tie them to different spectral of different end products of fermentation.

44:01 ? And uh but of course, know, this just lead to

44:06 right? To minimize the levels of in food beverages ah to to prolong

44:17 shelf life. Okay, and so said, well you need to institute

44:23 sanitary practices to reduce contamination. to get back to the right line

44:30 . So this is what led to germ theory of fermentation, right,

44:35 bacteria uh work all of these Right. Um there's some these end

44:43 of alcohols acids and you could link electoral species to survive in products.

44:51 , so tied it all together. , bacterium produces the end product,

44:56 what's causing the fermentation. Right, this germ theory of fermentation and so

45:03 to spontaneous generation. So knowing now you know contamination can occur that where

45:11 that bacterial contamination comes from? Probably in the handling of the air from

45:15 around and so forth. So he of has the idea. Okay,

45:20 , this is what in these broths are boiled. If you introduce

45:29 Right, good air, what have ? So he says I'm going to

45:33 this design. That's satisfying generation in . Okay, and allow air to

45:42 . Right, so he has this , it's a swan neck flask.

45:45 , So Aaron come in, he the medium. Right, So now

45:48 have a meeting that no lesson So if there's gonna be spontaneous generation

45:52 that's where it's gonna come from. I'm going to allow air to come

45:56 . Okay. But the thing is that curve traps microchip. Right,

46:01 microbes in the air travel on those and whatnot. And my gravity will

46:07 in that blue or in that in band. And the only way you'd

46:14 see contamination to draw is if you know, cut cut it off

46:19 . Right, I broke it right or tipped it. So it will

46:25 into the bed and then contact microbes the only time will become sterilized.

46:31 you basically showed even in the presence air there was no um uh regeneration

46:39 only if I introduced these contaminating So he did this because he knew

46:45 there were ubiquitous, right? They found in the area are found on

46:49 and whatnot. Okay so unless you care um you you would get these

46:56 . Okay now this um worked. was true but there were except except

47:05 was an exception to this. That's what Tyndall found. Right?

47:08 he comes along repeating pesters experiments Except every once in a lot match

47:17 . What? So he's the one discovered endospore forming bacteria. It's frankly

47:23 we have to use an article. ? So for of course for lab

47:27 used to play all the time to sterile media lab and we use the

47:32 paper to get rid of endospore forming . Okay. Um And so uh

47:41 he found So tendo did next here's what but in the sport foreign bacteria

47:45 like they will have types that are our selves that look like this

47:53 These are what we call completely vegetative . Just functioning growing living steps

48:00 You have types that looks like this with a white dot in the

48:06 All right. These are the ones a sport. These are completely free

48:16 . They've already been formed once it's formed. The process is done and

48:20 rest of the cells around the kind dissolves. You know for the free

48:24 . So these things are super highly as we'll see in Chapter four I

48:31 um Super resistant listening to boiling the . They they've they've unearthed these things

48:39 €250,000 sandwich fossilized samples. They've seen and have been able to revive.

48:46 it's super resistant. There's many things life life forms, proto zones,

48:52 , fungi, other bacterial plaques that scores. Okay. But when you

48:57 in the in those four in front it that takes it up several notches

49:02 terms of resistance to chemicals and Okay. And resistance they can be

49:07 can resist um uh boiling boiling for period of time. Not forever,

49:13 for a little bit. But so he did was he would see that

49:19 after boiling we get some some formulas survived. Okay so what you have

49:26 do is to kind of repeat boil cool. Alright so in the cooling

49:32 and those spores will germinate because they germinate back into a living form.

49:38 then you can zap them with boiling . Okay? And then but it

49:43 doesn't kill all not all the end sports that may be in there are

49:47 all at once. They summer killed marks from Germany so you keep repeating

49:53 boiling cycle then eventually you get to sterile solution. Okay. So um

49:59 it's all about the resistance of these . Okay. Again, autoclave has

50:04 ability to create conditions that can penetrate spore and rapidly kill them.

50:11 so uh so again, I don't it's really all about minimum is getting

50:17 of these these these types of industrial . Okay, um now.

50:25 So have you talked about the germ of fermentation? How does this relate

50:32 you? But if it does, doesn't relate to the germ theory of

50:38 . Okay. So yes or Mm hmm. Okay. Mhm.

50:53 there is time. Um you had pasture you had coke, which we'll

51:02 about shortly. Our contemporaries. Each aware of each other's work.

51:12 , so let's I'm gonna go ahead let's see what we got here.

51:22 . So yes, it does So what is how do they why

51:27 they correlate? They do? But the correlation? Something nice?

51:38 it's on the right track. So have So so think of another germ

51:44 of fermentation is microchip company. The chemical reaction and products increase as the

51:54 of sales increase. Okay, so are responsible for the chemical transformation.

51:59 , so the idea to link to disease is that microbes are transforming these

52:08 bodies were organic beings. Right? microbes are transforming this organic being human

52:18 a disease state. In fact. you can find as you said,

52:22 can find such as he was calling in the body. All right.

52:26 so uh that is definitely the Okay, um microbes causing transformation,

52:36 ? Whether it's in fermentation producing these or in the body creating a disease

52:44 . Okay, So with coke um so you see meant to show

52:52 of sugars into chemicals or healthy human a disease state. Okay. So

52:59 so with coke then, enables us establishes the framework of how a microbe

53:10 be tied to a specific disease and that disease. Okay. Now,

53:17 100 plus years of knowledge since I'm aware that that framework framework is

53:24 always consistent. It's not always Like he said, we're aware of

53:31 exceptions to this. Okay, but what he did was, but

53:37 doesn't mean his what are called Kochs are not valid. They are

53:44 It's it's the framework that's used Okay. But we're aware of where

53:49 may differ from and and and adjust . Okay, so but he right

53:57 of the box, he actually began a disease that was relatively easy to

54:02 this what's called chain of infection. , so anthrax um and interesting

54:09 the bacillus bacillus is one of those those four forming tax we just talked

54:14 . Okay. And uh in so was a country doctor and out in

54:20 area he saw cattle living an outbreak anthrax and cattle were nine.

54:25 so anthrax affects livestock and um very to establish that, you know,

54:33 counselor disease versus not diseased in terms symptoms and whatnot. But you can

54:37 a blood blood test and all cattle that had council had anthrax.

54:43 had what you see there on the . These are the of this species

54:49 and chains like this and you see in the blood. So there's no

54:54 . You know, because you're not to see bacteria in your blood ever

54:57 you're of course sick infectious disease of types. But you know and that

55:04 their blood. All right, counsel healthy. Did not. So it's

55:07 of easy to kind of make the . Okay. Didn't require anything other

55:11 having a microscope. Alright. Take sample of blood sample under a

55:17 And but you know that And he that rabbit model, right? Inject

55:23 into a rabbit. Rabbit gets sick the same symptoms etcetera. Okay.

55:26 you recover the same bacteria from sick here? So it all fits very

55:31 . Right, right out of the . Okay. But it went up

55:35 launch in terms of difficulty. But now you have something that wasn't

55:41 easy. Okay, so tuberculosis is of those. So the work with

55:46 required development of aseptic pure culture Why? What was that? That's

55:58 the agent. Alright. Mycobacterium, is on the smallish in of material

56:07 but that's not the main thing. You know, it's it's a organism

56:14 infects your lungs, respiratory system? your lungs. Um Not as easy

56:19 take a blood sample and see if there or not. Right.

56:23 you have to go and take what's a sputum sample which is kind of

56:26 mucus that you cough up in the infection. You have to test that

56:31 have to and and microscopy was difficult my collection is kind of smaller.

56:38 couldn't distinguish it maybe from other bacterial because you have other bacteria in your

56:42 as well. And so you have be a way to kind of find

56:47 thing out. All right. This where culture techniques come in.

56:51 Development of solid media. Um Making culture. Okay. Take it for

57:00 nowadays because it seems pretty basic. it's it's still it's still done.

57:05 can't not do it without without getting cultures and work. So, the

57:13 of solid media then. Okay, one to get a sample, Put

57:20 on the plate, drink it out . Right? And you see that

57:26 can find uh In this case two . Right? So this uh this

57:35 certifying agent, which is our seaweed. S and others.

57:44 you know, this was evolved out the way to how do we find

57:47 one? How can we work with to see if it's causing disease.

57:50 . So um so I just put couple of things in here. So

57:54 sample, you know, can be environmental sample. It could be a

57:57 sample. Um So the question will every microbe in the sample grow

58:02 that plate? Michael, that's in sample. They're necessarily going on on

58:11 plate. Why not not the environment microbes can? Mhm. Okay.

58:23 has to do with um There is one media type liquid or solid that

58:30 ever satisfy the needs of every single samples. Not everything eats like

58:37 Many microbes do can eat like like us means we eat complex organic

58:44 sources, right? Use oxygen. . There's lots of bacteria to do

58:50 , but not there's a lot of . Alright, so the summer

58:56 right? Somehow different. Just different . So, no, you're never

59:01 never gonna find a medium that satisfies . Okay. But you will find

59:07 find stuff. Okay. And so beauty of this is you can then

59:12 each type onto its own media and your culture and that's the essence of

59:18 know, you want to study the . Is this the one that's causing

59:21 or whatever it is. You want do with it? Look at it

59:25 itself separate from other things. And you can establish whether it's you

59:32 to isolate the DNA from it to it or whether it's to isolate approaching

59:38 making Because you think it's really next ? Yeah, billion dollars producing

59:45 whatever. Right? So you have give your culture of it, grow

59:49 up. Right. And work with . Okay. And like I said

59:54 , development this technique the springboard all of microbiology, everything from um studying

60:03 just you know, disease, but stuff, right? Studying, you

60:08 , how can we uh exploit this other purposes. Right, biotechnology

60:14 All these things springboard from this Now we're talking about solid but yet

60:19 will mention this later in Chapter four liquidity. So both forms might have

60:26 roles in in terms of um how you use them? Okay, I'm

60:32 I'll wait until after four to go more details. But solid media is

60:36 media. There's there's semi solid media everything has this kind of role,

60:40 ? But you can't do pure culture involving plates. Salt media And this

60:48 to be a part of it. I'll explain that later on. But

60:53 critical for that. Um uh prior finding auger plates, I think coke

61:01 actual cut off a potato slices of , uncooked potato and use that as

61:07 awkward plate. I don't think it that well. But uh anyway,

61:13 talking about Porsha. So linking these disease and micro together. Right?

61:19 the the process is or his positive say only healthy animals, healthy animals

61:28 harbor the infectious microbes only diseased animals . Okay. You should be able

61:34 isolate the microbe from the agent continent from the animal. Okay. Pure

61:40 . Right then. Take that. culture. In fact a healthy it

61:46 down to the same symptoms etcetera. . And then you can re isolate

61:52 that rabbit the same microbes. So beauty of the method is there's two

61:59 isolations of microbes. They both have be right. And so you have

62:05 built in way to corroborate your which is what you always want to

62:09 in science. Right? So that certainly it gives confidence that yeah,

62:16 is the infectious agent. Okay. of course we know again with a

62:22 more knowledge that um there's exceptions. ? We all know about the asymptomatic

62:29 . All right, healthy animals, humans can carry a infectious agent and

62:37 have disease. Um You got vaccinated meningitis before coming to college.

62:46 Meningitis is carried by 50% or more a healthy population. They just happened

62:52 there. Never never had meningitis but carried asymptomatic carriers. Right. When

62:59 is a out recommend itis it's traced another human who's perfectly healthy with this

63:05 . Okay. The same is true other certain infectious diseases. Um One

63:11 . One pathogen. So pasture. sorry to cook. Thought it was

63:15 a one for one whether it's one , one pathogen or one pathogen.

63:20 disease It was That's not true Okay. Um uh pneumonia. Perfect

63:28 . Right. Many things can cause . Protozoan types can cause pneumonia,

63:35 can cause pneumonia. Different types of can cause pneumonia viruses can cause

63:41 Okay. So many different types can that particular disease. Okay. Um

63:47 pathogen. One disease. Not always case. Okay. Um Right.

63:54 cause strep throat can cause um different of skin infections and it's called.

64:02 a Simples scarlet fever, flesh eating . You've heard of that?

64:07 Um All these are caused by that type of pathogen. Um And then

64:13 course culture ability. Right? Having animal model that will be able to

64:19 you can grow your suspected pathogen in not always easy viruses. Alright,

64:27 um quote was not dealing with a disease. Right from the beginning,

64:31 would never have known what was going . Alright. That didn't have the

64:35 . I didn't know that something like could exist. Number one or not

64:39 the techniques to deal with it. viruses present another complication. Okay.

64:47 So again the framework uh is valid we just we just normal.

64:55 were we know what we can adjust potential changes any questions. But so

65:06 to controlling the growth of 11 of microbes, obviously they discovered microbes can

65:12 infectious disease or then well how do how do we control this? How

65:16 we get rid of them? What we do? Okay so this is

65:19 vaccination comes in. Okay so the of variolation that relates specifically to

65:27 You say variolation that's that's specifically about . But it's taking your smallpox one

65:34 these postures all over their skin, ? And the posture will contain live

65:40 viruses. Right? So I can't you what the random thought was for

65:45 to take some of that material out a infectious person and a postural and

65:50 take it and cut it into somebody arm. A healthy person's arm.

65:54 that would give them immunity might be from disease most of the time.

66:01 they would they come down with smallpox dive. Okay. But it was

66:06 was a way to of course they want to wear in immunization but that's

66:11 about. But they knew that it prevent disease and those that survived the

66:17 variolation. So, um so just your work with this as well for

66:25 disease called fowl cholera um which happens chickens. But vaccination. So I

66:33 knowledgeable about this by now. Um vaccination uses a less serious, less

66:42 form of the infectious agent is what call a continuing to attenuate attenuated

66:48 There's one containing an infectious agent that's chemically treated. He treated his own

66:56 to not enable to cause disease but to produce an immune response.

67:04 you can pasture would take uh for of the fowl cholera. He would

67:09 bacteria that caused that. He would he left it on the plate by

67:13 for for weeks and weeks and weeks just got old and then it lost

67:17 of its virulent but still couldn't produce immune response. So it actually attenuated

67:22 by aging on a plate. Okay less serious. Um So the molecular

67:28 of the pathogen, that's what you . Okay. And so here is

67:33 pathogen you inject. Right? So you have vaccination that's not not always

67:37 . Just hold after we're talking about later in the semester there's a whole

67:45 of different ways to administer a Doesn't always have to use the whole

67:50 . You can use parts. Um And so of course what's happening

67:55 the bacterium virus or virus or could is the presence of antibodies?

68:05 So antibodies bind to antigens? The antigens can be anything on the

68:13 because antibodies only bind to an infectious . You can't go to turn right

68:20 buyers. What's on the outside. what's on the outside the cell wall

68:25 a bacterium? A capsule on a , a viral spike. We heard

68:31 those things. Right. Um So instructors are outside and the seller virus

68:38 entity our potential and that's what the can buy into. Okay. And

68:43 binding as we'll see later in the or induced a lot of different

68:51 Okay. The bottom line of which to get rid of it. So

68:58 so in general he used character not cowpox. Okay so but he used

69:07 successfully. Alright so why was cowpox as a vaccine? So why was

69:12 vaccine effective effective Even that had Why is that what's unique about

69:25 Yeah. Behind. Yes it's all the antigen. The antigen are very

69:35 related to each other then anybody can buy into. So and so so

69:40 called cross reaction of of antibodies. small cowpox is very similar to

69:48 fortunately cowpox doesn't cause disease in Um And so it's an excellent choice

69:54 a vaccine. Um It will produce new response without any the effect of

69:59 sick from the disease. Okay um look at the covid vaccine. Is

70:06 what we call an attenuated whole virus ? Okay. Which which one

70:15 Yeah so that's that's there. But other one is. So the the

70:23 is the M. RNA vaccine. J. And J. Is the

70:28 that actually is a whole virus It's attenuated virus vaccine looks like

70:34 So use a virus called adenovirus that um basically genetically modified to take out

70:43 the genes that make it virulent disease . And put the jeans in

70:50 Like for the covid spike the gene the covid spike into the genome of

70:55 virus and then that virus infects one your cells and will produce the the

71:03 . RNA. For that that spike then uh it'll it'll be on the

71:09 of the cell as you see And so the caribbean spikes are sticking

71:15 of yourselves and then your immune system come along attached to it. Who's

71:22 etcetera. So that's But the but But you're right. The Moderna fighter

71:26 the mmr vaccine, Right? But is exactly the wholesale vaccine. J

71:34 J. Okay. That's I got one. Actually, they have to

71:38 anyone that sound as good as the one. So but um but

71:42 but there is a difference. We'll about this later in the semester.

71:46 worry so much about this now. . But we'll cover vaccines with different

71:51 . Um So this is one of pet peeves here. That's why I

71:56 this one because this is still in context of do in the context of

72:04 controlling microbial post. Right. So is one way. Ah So which

72:12 these? If there is is Okay. The nurse sterilized my arm

72:17 I received vaccination, the nurse has my arm before I was vaccinated.

72:23 A. Or B. Okay. , let me go ahead. And

72:46 54321 mm hmm. Okay baby. . Mhm. Neither A and

73:00 Are correct. Okay. What is correct terminology? I mean A.

73:05 this semester, if you did 31 ? Yeah, it's the a word

73:16 nurse applied antiseptic to my arm. . And the sepsis. Okay.

73:22 they're sterilized your arm, I don't your mom would be there anymore.

73:27 . Correlation means you killed every living virus spore and those sports,

73:34 Not disinfection. Remember you can't drink , no matter who said that.

73:39 , I can't drink bleach and it's cure Covid. Okay. So this

73:44 is of inanimate objects countertop a It doesn't affect the wall. A

73:50 door knob. Um, and a is applications of living skin tissues.

73:59 , So my pet peeve is that use sterilization terms completely wrong all the

74:04 . Right? It also doesn't refer not having kids either. Okay,

74:08 this context. All right. um, so, anyway, so

74:13 subject disinfectants. Um, antibiotics. you guys we gotta go. So

74:20 is this is the last slide for . Anyway, so I'll start with

74:23 next time and we'll finish up Probably get into a little bit of

74:30 three maybe. Thanks folks. Good

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