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00:09 Ok. Ok. Ok, Uh welcome. Turn this down.

00:36 . Um let's see here. So couple of things I mentioned last time

00:45 since um, uh, not, still got a couple of weeks

00:50 Not even more than that, but exam coming up on the 20

00:59 Um uh, so, uh I out the email last week again today

01:05 the, uh the, the cost scheduler protocol has changed for the,

01:11 the better for you. You have be on there at 1201 on the

01:16 to jump on a seat. So it's, it's, um,

01:20 get the submit your preferences, I it is. So, but

01:25 follow the link that's in the email that. So I wanna be sure

01:29 up on that. Uh uh because schedule does become available on the eighth

01:34 I understand the process, right? like the first three or four days

01:38 the opening is when you can submit times you want to take the

01:43 So again, it's not a race be there at 1201 in the

01:45 That's the point. Ok. So , just follow the instructions and the

01:50 and all that, that's in the . Ok. Uh, what

01:54 So, um, tonight is, those two things, the quiz and

01:59 uh, smart work. Um, , um, what else?

02:07 um, ok, so we're gonna up, uh, chapter 13

02:13 The same kind of concepts, I you'd say are carrying over in the

02:20 . Uh We're gonna, you if you did the, um look

02:23 the videos chapter 14 beforehand, hopefully took a look at it. Um

02:29 big uh I guess big concept if want to call it that it's kind

02:34 the uh reduction potential and what all entails. OK. So we're going

02:41 that today. Um The, the uh we've been talking about, I

02:52 throw up this, the show this because that's how I like to explain

02:57 in really simple terms. And we've this already a number of times where

03:01 draw a box and we have uh transport chain, the owner an

03:10 right? So it feeding feeding electrons the chain uh maintaining flow by going

03:19 a donor to an acceptor at the , right? And um and then

03:25 , and so the reason is why doing that well, because um by

03:29 that chain, if you will, um electron transport system with electrons,

03:36 transfers release energy and that's used which we then eventually capture energy from

03:42 the form of a TPS. So we're gonna learn kind of that

03:48 logic if you will of that process . OK. And um how molecules

03:55 their roles in terms of how they to deal with electrons, so to

04:02 . OK. So some have one of dealing with them that they like

04:07 have another way of dealing with them they prefer. And so you kind

04:11 organize those guys gals into a lineup facilitates the flow, right? But

04:19 all based on production of energy. ? Because you need that energy.

04:26 remember that basic concept we talked about the beginning in 13 energy releasing process

04:32 energy requiring process. OK. And the energy release in here is what

04:41 the energy to pump protons. And the energy release itself comes from the

04:46 arrangement of the molecules you use in chain and for bacteria, the the

04:54 of donor acceptor uh what's in that varies. OK? It's why they

05:02 such a diverse metabolism. OK. so in large part is, and

05:08 , that, that that thing there donor electron transport chain acceptor, that's

05:16 . OK. That's what we'll focus 14. OK. So let's look

05:20 uh some of that's gonna be a . Let's look at this question

05:25 OK. Uh This, this is as you're going through, right?

05:31 you're going through the material for uh is basically 13 stuff, right?

05:37 glycolysis, the stages, right? , knowing the stages, so if

05:43 kind of get the grasp of you should be able to look at

05:45 picture and pretty much fill out with these letters are, you know,

05:51 quickly. OK? And so, , we'll go through, I'm just

05:56 for what, which one is d . Um, so figure it out

06:01 on what's, what's feeding it, . Where is it going?

06:09 That could be a clue to OK. So it's like I

06:14 we'll go through what you, I've this already once before, but going

06:18 , what do you need to Right. That's always the number one

06:21 . How many you know about right? So, and again,

06:25 focus on individual reactions that the book giving you. OK. There's like

06:33 plus of those things you don't need know that level of detail.

06:39 OK. So let's uh count down from nine. OK. OK.

06:51 , of course. It is gonna acetyl coa OK. So if we're

06:56 rattle off the other ones. All . So D is that OK?

07:03 Let's see. So went from So stage one is basically here

07:08 I think everybody in uh altogether can A is gonna be a, is

07:15 be Pate. OK. Um uh , the group of Pate, pate

07:25 a silica way we established that a to. So A is here,

07:33 we go to that of course, crib cycle, right? Uh That's

07:39 and then um uh so these energy are all going to g electron transport

07:47 etc for short. And then these things so like the ease and they're

07:55 same. So the e here and are gonna be what? Yeah,

08:03 . OK. CO2, CO2. let's see. So BBBBBB is gonna

08:12 N A DH probably OK. And probably could be an A TP.

08:19 . We get those two things out glycolysis, right? Uh What

08:24 So we got uh jeez I got . So J it says the A

08:28 A, right? A TP is I make the uh here's over the

08:34 is pretty obvious, right? It's , right? Proton gradient occurring

08:39 Uh G decay J decay, excuse . So it's called that AD P

08:44 the fast food when A TP, ? So, you know the let's

08:52 uh the next slide shows what to here, right? So uh same

08:57 we see here, right? Same . So um the wing um the

09:06 , right? Stage, one, , two, stage one, glucose

09:11 pyr stage two py, the C and the creb cycle is three,

09:16 label these 1234 and then fermentation is of its own thing. We don't

09:27 these are the stages of respiration, ? That calls us respiration.

09:32 fermentation is this other thing that some can do if they can't respire,

09:38 ? So, if we're gonna go 1234 route, ok, then that

09:46 that there is oxygen present or something you can use as a terminal

09:52 a nitrate or what have you, . Um And so because that's what

09:58 really going this route. Ok? that's respiration. What are you going

10:04 respire with 02 or are you an respire? And you use nitrate,

10:10 presence of those are what will dictate ? Of course, in the organism

10:17 , it can do that, And so that's what determines whether you

10:21 11234 or you go to fermentation or . Those are kind of the

10:27 And so, of course, we're looking here at in 13 and

10:32 most of 14. Uh well, certainly the first half of 14 is

10:39 , right? Using fermentation respiration and kind of what we're focused on.

10:43 remember that um we're, we're kind looking just at the chemo organo heterotrophic

10:53 thing who we are, right? um we'll focus on other types,

10:59 synthesizers, lithos uh later, So you know, again, if

11:06 see these terms, so everything. 1234 stages, 1234, here are

11:13 comprise oxidative phosphorylation. OK? You actually phosphorylation, you see respiration kind

11:22 go hand in hand. OK. , don't, when you, when

11:28 envision fermentation only, just see that your head, right? And only

11:37 because it doesn't involve, you glycolysis is a part of it.

11:42 . That's what feeds into it. ? But not anything else. No

11:47 transport chain proton pumping that stuff, ? So, fermentation is its own

11:52 that relies on glycolysis. But that's not, not, not, not

11:58 , not three or four or part fermentation. So, um let's

12:04 So let's look at a question in different way, similar uh idea,

12:11 let's look at this one. So here again, the same diagram

12:17 see all the time, right? so if we're looking inside the,

12:23 were down to the level of the of a molecule, OK? Inside

12:28 coli. And we're gonna try to what is this guy? Is this

12:32 right now aspiring anaerobically or aerobically? , what would tell me that?

12:37 location? 12345 would tell me OK. It would tell me,

12:44 , this thing is definitely respiring aerobically I see this in location,

12:50 OK. OK. OK. So look at that down here. So

13:28 . So if I am respiring I spring aerobically, what would I be

13:36 ? What are you using right You're, you're aspiring aerobically right

13:40 Where would you find oxygen in this in 12345, three? Of

13:50 right here. 02 would be sitting on the water. OK, terminal

13:56 . You're gonna learn why oxygen is the end there today. But it's

13:59 about keeping electrons flow going, options best grabbing electrons. So, if

14:05 anaerobically respiring, what are you gonna at? Number? Number, number

14:19 , how can it be? But three? If you're respiring,

14:22 respiring with 02, that's where you're look trouble. Accept. If you're

14:27 aspiring, it's respiration, it's just different term acceptor. You still look

14:33 three, right? Three tells you does one tell you which one the

14:42 ? And so if you're a litho , where would you look one that's

14:48 tell you? Oh Is, is, is there an inorganic source

14:51 number one or is it completely OK. And if it's completely

14:57 well, that could be glucose, going to CO2 and water,

15:01 But you'd look at one because that one? Because that's what's feeding the

15:07 . So think of this uh keeping even more basic, right?

15:13 OK? Is there oxidize it? electrons speed system? OK. Uh

15:21 we don't have something back here down to catch them or to grab them

15:26 to want them or a better uh then nothing's gonna happen here.

15:31 not gonna have any slow going and just gonna stop, you know,

15:35 quickly. If you don't think put a plastic bag over your head

15:41 see how long you last. Because literally you're stopping three from happening

15:46 you do that, right? Everything backs up, that nothing happens,

15:51 ? Um So source uh acceptor keeps train running. OK? Um What

16:00 gonna look at today in a little is how, what's the logic of

16:05 that's set up? Right? And I'll save that for a 2nd

16:09 we have to um finish up. this is the last bit of 13

16:16 here. OK? So again, in this or as I mentioned

16:21 we're focused on metabolism, right of these complex organic molecules,

16:29 We eat various things. We can proteins, fats, carbs, uh

16:35 can eat, we eat nucleic you know anything that's kind of these

16:38 complex organic molecules, not all types we can eat many of these things

16:43 do. Uh but of course, and other prokaryotes have a more they

16:51 more, have more options, let's they can eat other things that we

16:54 even think of to eat for right? And one of those is

16:58 compounds. OK. So um what an aromatic compound? Well, the

17:05 of these benzene rings, OK. so which is basically C six H

17:15 , OK. It's a very stable . OK. And so what what

17:23 aromatic compounds? Well, lots of industrial chemical processes in all these

17:30 oil and gas industry, uh paint , uh manufacturers of dyes, uh

17:37 also many of these chemicals are used different processes. From making cardboard boxes

17:42 other things. Right. And um the thing about them is they're

17:48 stable, right? They don't break necessarily easily. Um They, they're

17:54 very toxic and it can be very in relatively small concentrations. Ok.

18:01 so these things have been responsible, know, pollutants that have knowingly or

18:06 been discharged by various companies into uh streams or other environments. Um The

18:16 effect of these can be quite uh . So, uh because they also

18:21 necessarily evaporate ray equipment or volatilize, necessarily that volatile, either they stick

18:28 . And so, uh so um was found out quite a while ago

18:35 bacterial types could eat these kinds of and they were then exploited for use

18:41 biome, which is using um biological . It can be cells, it

18:47 be enzymes and things to break down kinds of uh unwanted um pollutants,

18:56 it's oil spills or what have Um that vetro types can break it

19:02 and make, make, make the go away. OK. And so

19:08 in a, in a, in smallest nutshell I can give you here

19:14 to know about what to know about is to break down the aromatic compound

19:20 breaking that ring. Number one, the ring, you do that then

19:27 a couple of steps, give or you then go into the pathways.

19:32 already know it's gonna funnel into making PVA and, or, and eventually

19:38 into the crep cycle. So stuff already know we just going to funnel

19:42 that system and, and be broken to CO2 and water, right?

19:47 get energy from it. OK. don't worry about memorizing these structures.

19:51 are just examples of aromatic compounds, ? The point is that they

19:56 as they're broken down, they funnel a central point which is um

20:07 not that hold on. Uh let's try this. OK.

20:17 So right here, cat cold. . That's where they eventually get

20:22 whether it's to you taste kind of little bit of a turn to get

20:26 but it gets there. But everything they all funnel into kinda call number

20:32 , number two is how do we this ring? OK. 02 is

20:38 we do it. OK. And 02 is added to the ring break

20:43 we get to here, this thing neonate, OK. That's the product

20:50 the ring breakage. Then we get into funneling into pathways we already

20:57 right. TC A cycle uh pursued you either going, going to pirate

21:04 there or another route, you getting into the TC A cycle where

21:08 course, you know, in there form a DH. All right.

21:18 . The na A pen go on . Let's see. And OK.

21:26 A DH fa DH two at right? So, you know,

21:33 already know we get those of the A cycle, right? And these

21:37 to electron transport chain and make more . OK. So, um so

21:45 , the takeaways here. And so dioxin is the enzyme that puts the

21:50 on the molecule and causes the OK. So uh so aromatic aromatic

22:00 , adding oxygen to the ring, the ring and then the products fall

22:04 crep cycle and you get energy. . And so pseudomonas, RTO coccus

22:11 pseudomonas, these are these pathways are very long, there's gonna be 3

22:16 4 to 5 genes involved and there's ones for different Ame of compounds.

22:23 so we've taken these organisms engineered, know, gene cloning and taken pathways

22:30 um have strains that can break down various types of compounds uh and then

22:35 them in the environment and do their . OK? To, again,

22:39 remediation kind of application. OK. OK. Any questions about that,

22:47 ? So just again, just remember big things, right? The adding

22:50 , break the ring um components going TC A cycle, get energy.

22:57 . Um All right. So that's . OK. So uh we're gonna

23:04 now is focus kind of um basically respiration. OK. And first looking

23:17 the, so talking about restoration, talking about, of course, as

23:23 already know redox reaction, right? um as I alluded to earlier molecules

23:33 their particular redox um properties. So we already know redox is about

23:44 , some Michaels give them up, Michaels take them in. OK.

23:50 you can kind of lump a lot molecules in that ability, right?

23:54 they types that like to grab Are they types that like to give

23:58 up? Right. And you that's really what we're gonna be focusing

24:02 . OK. So, all So let's look here. So this

24:07 just an example of we focus on process in a single cell.

24:14 Uh It happens in your cells and many cells, right? Any cells

24:17 respire happens inside the cell. There are, there are types that

24:23 interact with and carry out the process conjunction with other cells. OK.

24:29 in both examples here, I'm just to draw this line. So Geo

24:37 use one that can take acetate right? Oxidize it right there

24:45 you would think OK, the electrons be in, in the organism that's

24:49 the oxidation and it will get the right. Well, OK. It

24:52 get that but it also then takes electrons and gives them to another

24:56 So here's Tho bacillus, right? Tho Sarina and that other organism.

25:02 somewhat really of a symbiotic relationship. . And so this guy is using

25:08 to respire, res electrons to respire right nitrate respiration, um co2 to

25:18 . So example of what they call transfer. So not happening within a

25:23 cell but transfer between species. Um And so it has actually a

25:29 of applications, biotechnology wise. Another to show here is this blob

25:36 it kind of is basically conducting facilitates the transfer between the two cell

25:44 . OK. And you can see example of something like that would be

25:47 blue appendages sticking out of the basically like wires, conducting electrons being

25:56 from one cell to another. So essentially like a wire sticking out of

26:02 cell. OK. And so, know, it, this can oxidize

26:07 of things besides um acetate. They're at it in uh uh uh biomed

26:17 using it as a way to get of certain types of waste like a

26:20 treatment plants or in landfills, things that. Uh Department of Navy is

26:25 at it for some kind of a different type of activity, but

26:31 lots of uh interest in this. . Um So anyway, this is

26:37 meant to show, you know, reactions importance uh certainly in us,

26:43 ? Gotta keep breathing, gotta keep electron transport chain going by feeding

26:48 And uh that's what gives us the bulk of our energy to do

26:53 OK. So, respiration. So kind of looked at it in a

27:00 overview kind of way, right? we're, we're focused here on

27:06 breaking down these large more complex organic of stuff we we eat every

27:12 right. Um in two ways, ? Fermentation, which really only our

27:18 do that. OK. Under certain . But certainly bacterial types can live

27:24 way. OK. But it's compared respiration, fermentation is much simpler.

27:31 . Um As we've seen already uh , more involved, there's more to

27:36 , right? That diagram you see there is basically representing restoration.

27:42 And so, so always remember, know I saw like a broken record

27:47 you know, here's the electronic transport and what does it do?

27:53 it contains electrons. So you gotta feeding it right? Oxidize the

27:58 OK. So remember though that the A DH being formed, those are

28:04 actual ones that go to the right? But you don't make those

28:10 you do have a source, You're not gonna make N A

28:14 For example, if you have taking glucose, break it down,

28:19 in some of those steps you produce N A DH. So that's so

28:22 that distinction, OK. And then and then we're gonna focus on here

28:29 the construction of this chain here. . And um you know, obviously

28:39 important, right? Feed it electrons then equally important is the terminal

28:45 Again, it's all about flow. . And, and if you combine

28:52 , so let's just look at um start with this question here.

29:00 Now, elaborate a little bit. , so now we're going to look

29:04 properties of the molecules that do these of things. OK. So,

29:14 electronic flow, the components of the transport system work optimally when they arranged

29:20 order from in this diagram left to . OK. You got four choices

29:28 . OK. Anyway, pause, can catch up. OK. Let's

30:21 down here. I'm gonna do another real quick. Then we'll kind of

30:27 some explaining. OK. All So we got D and B

30:33 Uh A maus, so let's go the next one. Uh Let me

30:38 put D and B was the consensus . All right. So this one

30:47 So which statement is accurate? Just look at the table down here

30:51 help you out. OK. Oops here. OK. So take a

31:00 that makes the most sense. So one thing we, as we're

31:08 through this and redux and reduction potential , is evaluating. So what

31:16 what do I, what do you by a good acceptor? OK.

31:22 what that means is it's a process energetically favorable. It yield energy doesn't

31:31 energy. OK. That's generally what look at in terms of I'm

31:35 oh, this is a good, is a good source. So this

31:37 a bad source. Isn't something a that's, that's producing energy. Is

31:42 a negative delta G? OK? kind of the parameter you look at

31:47 see. OK. Is this something good or not so good by

31:51 OK. Um because that's the it's one thing to have, you

32:02 , we're putting molecules together in this to keep flow going of electrons in

32:08 certain order. But that order that's also produces energy, right? Because

32:14 you need that as well in this . OK? Because think about what

32:19 electron transport chain is for, that's coupled to proton pumping,

32:25 And the proton pumping takes energy. that comes from electronic transport chain

32:32 OK? And we'll see how that . All right. So let's count

32:36 here. So again, it's it's certainly very important to have molecules

32:42 are good at giving up and good taking electrons within the process yielding

32:49 So um kind of more or less there. So let's go uh we'll

32:54 back to these in a sec. . So let's look at this table

33:01 trust me, I know even if was the second or third or 10th

33:05 , we look at it it. . So um OK. So the

33:13 to look at it is number focus on the pink column,

33:23 Focus on that column and then focus this first reduction potential. OK.

33:32 roughly here is like a line or that or negative reduction potential.

33:41 Down here, positive, negative progressively more and more positive as we go

33:48 , right? So it's a ranking of the ability of a molecular species

33:57 be an electron acceptor is it good is it bad? OK. At

34:04 function? And so it's a continuum modules are really bad accepting electrons.

34:13 are really good. And that's that's what reduction potential is.

34:18 Reduction potential is. How good is ? What's the ability of a molecule

34:23 grab electrons? OK. But they're to line this process up right from

34:31 more and more positive reduction potential, ability of molecules to grab and grab

34:35 grab electrons because that's what maintains right? Remember that's what you have

34:40 keep going, keep that flow going source to acceptor. And not surprisingly

34:48 molecule you put at the end if can use it and we can because

34:54 aerobic respire, we put 02 at end, highest reduction potential plus

35:01 OK? That's numero uno OK. look at what you, what do

35:05 look at it and go, what's bottom list? That's the way the

35:08 is, right? That's how they it. OK. So the the

35:13 at highest affinity for electrons in biological . Yeah. So um CO2 and

35:23 that's 11 part of the equation. . The other part is then the

35:30 G OK is that tells you energy or energy required. OK. So

35:37 versus negative delta GS and so you how these are the opposite of the

35:45 potential. So negative reduction potential, delta G OK? It actually takes

35:51 energy input to force the molecule to electrons look at CO2 right CO2 which

36:00 essentially CO2 fixation, right? It a lot of energy to to do

36:10 . No wonder, right? Your , your of plants, um bacterial

36:18 , right? The photosynthesize uh and CO2. Um the the energy for

36:26 comes from light, right? Light to convert that to chemical energy to

36:31 be able to use CO2. Take a lot of energy do

36:35 OK? Um So let's um so , this, this concept here delta

36:45 is and reduction potential. OK? can see how using oxygen, all

36:51 , to respire with, all a lot of energy negative big negative

36:58 G. OK. So when you , so what you wanna do?

37:04 , let's let me start here, start here. OK? There's different

37:08 to different ways to look at it you want to figure out a way

37:11 you best remember it. OK. so uh the textbook uh definition of

37:18 if you're more AAA weak acceptor, again, the ranking of bad to

37:24 , weak to strong, it really about, you know, is it

37:28 process that is giving off energy or it requiring energy? So generally they

37:33 is if it's releasing energy, that's that's good, right? That you

37:37 call that a good donor or good . It has that feature, it

37:41 off energy, you can do something beneficial, right? So um and

37:47 go well, OK. Co2 takes . OK. Yeah, but if

37:51 an autotroph, that's your carbon you just got to do it.

37:55 the way you use the CO2 is have a process attached to it that

38:00 you lots of energy. Whether it's using light or chemical energy like a

38:07 , you know you are what you and if you use CO2, then

38:10 better evolve a way to get have energy using process that can energy releasing

38:15 that you can tie with. Because know CO2 fixation is gonna be a

38:18 energy consumer. OK? Sometimes that's way it is. OK.

38:25 so rule of thumb, if you're weak acceptor, OK, you generally

38:33 a strong donor. But don't take to mean that CO2 is a weak

38:39 which it is, it doesn't mean CO2 is a strong donor.

38:44 So you look at these things in , a single line like this one

38:49 here, right? H two uh protons plus two electrons to give two

38:55 , right? It's pairs. So you think of each, each

39:01 here, right? Each chemical reaction break it down into pairs,

39:06 So you have this form and you that one. OK? What we

39:13 you've taken chemistry? You may have um half reactions OK? That's what

39:18 looking at here. So in these , you have like what are called

39:22 reactions, right? Um I'm gonna on that on the next slide.

39:26 let's let's look at um strong. in each pair, right, you

39:31 the pair there of protons and hydrogen , right? That 1 may be

39:40 at one property, but the other may be really good at the other

39:46 . So in this way, this one's a weak accept it,

39:49 this guy is a strong donor and that's the case or vice versa.

39:55 . So a more positive value of potential. So folks more positive,

40:02 acceptor, strong acceptor. OK. it too, right? There's two

40:08 , there's 02 and there's the OK? And so uh that's kind

40:16 change up the side a little bit don't worry anything you see up here

40:20 get next day. So here so here's another way to look at

40:25 . OK? A really basic way I sometimes use is if a molecule

40:30 a really strong positive reduction potential like . OK. Think of what are

40:39 electrons are negatively charged, right? . So if that's the case,

40:45 , positive likes positive likes negative, , positive, attractive, negative,

40:50 ? Really high affinity, right? if my positive number is really

40:54 it probably means it's pretty good at on electrons, right? That's one

40:59 to think about it, right? very positive reduction potential, very high

41:03 for like conversely, if it's really at that, it's gonna be a

41:09 value and so negative repels negative, ? So they, it won't like

41:14 grab electrons, it rather would get of them, right? So that's

41:18 way to look at it. Up there is a paragraph that's another

41:22 to look at it. OK. , so here I'm just focusing on

41:27 at oxygen um reduced to water gives that reduction potential which equates to a

41:34 big negative D OK. So each of the pair, right? One

41:41 the acceptor, one's the donor that so if the acceptor form is what

41:48 seeing it do over here, That's a pretty good value.

41:55 So that part is gonna tell you , OK? If it's, it's

41:58 02 is really good ie lots of formation being a an acceptor, then

42:04 the, the, the partner there not very good as a donor,

42:10 ? Water for example, and, it's not right because what happens is

42:16 it's, if the acceptor form and uh reduction to water is a name

42:24 , then you flip the sign, water as a donor is actually a

42:31 delta G, right? Uh as parenthesis H2O. OK. And

42:40 all we're doing is taking a reverse , water oxidized 202 and electrons.

42:48 ? Solve it good one way it's gonna be, it's gonna be bad

42:53 other way. OK? Um And example, there again, plants,

43:00 ? Alga um uh use the water the electron source or plants analogy and

43:10 um oxygen photosynthesizes. And so it a lot of energy to get those

43:15 from water. That's the light splitting photos. You remember that right?

43:20 light energy again involved, right? , to get the energy to do

43:24 , it doesn't happen on its right? It takes energy input to

43:27 it, right. So that's the water pair. OK. Hydrogen proton

43:36 , right? So again, you that negative reduction potential will equate to

43:42 positive delta G. OK. So , same thing H plus is the

43:48 H two to donor. OK. so as uh an acceptor,

43:56 you can see the positive delta OK? And then that's gonna try

44:02 you well, we go the other , gonna be a negative dosage.

44:07 ? And it is, and so and hydrogen as a donor source uh

44:15 very common among fairly common among all lots of bacterial types because each hydrogen

44:21 is not that difficult to uh to as a source because it's a by-product

44:28 fermentations and other things. And so metabolic processes. So in the

44:33 it's not something that's uncommon. So gas is relatively common. So it's

44:38 can use it and get energy then a pretty good thing. And so

44:41 see a lot of different bacterial species to use, use that it's called

44:46 hydrogen or trophy we'll talk about it week. But uh very common metabolism

44:52 that reason, it's very accessible and get lots of energy from it.

44:56 um so again, so the paragraph is a more positive um reduction potential

45:03 as in the oxygen, right means reducing the electronic acceptor, which is

45:08 02, right? Use more energy it does, right? A more

45:14 value as in the hydrogen, the plus H two pair, uh a

45:20 negative value minus 420 means that oxidizing donor, the H two guy,

45:25 girl is will be more uh you more energy and it does OK.

45:33 so you can look at everything in table, you can break down into

45:37 like that where if it's one that's be on the negative reduction potential

45:42 then the donor form of that pair be the one that will be energy

45:47 and will be that's, it's, will be its role as a

45:53 That's his best suit to those that a more positive reduction potential. It's

45:58 um it's the acceptor part of that couple that that's its best role.

46:06 what you do of course is you strong acceptor with strong donors and that's

46:13 as you see here, you know two, right? As a donor

46:20 energy, right? Oxygen as an , right, releases energy. And

46:27 these things are additive, right? GS are additive you can add them

46:31 . So you combine hydrogen metabolism as donor with oxygen, as you know

46:37 respiration and you add those together, get even more energy, right?

46:43 that's, that's what fuels the whole transport thing. OK. Um Let's

46:51 back here for a second real quick questions. OK. So uh so

46:56 , we're going from uh those with uh positive to more negative.

47:06 So in terms of reduction potential we're is that right? Record negative

47:19 OK. You need more coffee. . Pa I think 02,

47:27 Uh This could be, so it's be strong, strong donors to strong

47:33 , right? So remember these right? These are weak acceptor,

47:41 donors, right? These guys are ? Acceptors, wheat donors,

47:47 So that's how our chain is gonna right flow going that way more negative

47:53 positive reduction potential. OK. Um that comes about by again from donors

47:59 the front, progressively stronger acceptors as go the right. Yeah. Um

48:04 one. So we've, I've been on hydrogen for the last five

48:11 So yes, that that very good source. Lot of energy production co2

48:16 have to have a lot of energy , right? Same as water,

48:21 ? It's gonna be the reverse of . So not minus 158 but plus

48:26 in terms of delta G. So both of those our energy positive

48:36 . Yeah, that one's energy OK. Um Any questions? So

48:45 ruminate on this for a bit, ? But you know, just think

48:49 the logic. OK? Um Let's over here. OK. So this

48:58 just more of the same, I , I've already said this enough,

49:02 think. Um So again, uh back to the same, the same

49:07 of uh the the acceptor donor right? And a a negative reduction

49:16 means that the donor form is gonna one that yields energy. So use

49:23 , that feature of it. The feature is better than the acceptor,

49:26 that one. OK. In this , it's H two. OK.

49:30 And again, it's all additive. we, we can combine that

49:34 Um And so again, it's also that if this is, this is

49:41 , right? That something's got to reduced, right? So we're gonna

49:45 that and it's additive right here and and lots of energy. OK?

49:54 it's the energy to do that the gradient comes, comes from that.

50:02 . That's what's fueling the protons being out. OK. Um So for

50:10 , you beating stuff, right? keep breathing and you'll keep that thing

50:14 , right? Um OK. So here we go again, more

50:23 Here. All I'm I'm doing here showing you what's, what goes on

50:26 your mitochondria. OK. So you've an A DH is what you,

50:32 we've been producing a lot of these aerobic respiration, right? Glycolysis,

50:37 oxidation creb cycle. And so all N DH s are gonna go electron

50:43 train and N A DH is a good uh negative delta G combine that

50:49 oxygen which you already know is good again, additive, lots of

50:54 That's what fuels the whole proton right? So let's look at this

50:59 here, right? So um So focusing back on pro carers that

51:09 let me put this up. So being out in the, in

51:16 wild Coast beach, OK. A bacterium. Hold on. There we

51:24 . A uh bacterium is gonna be the, at the mercy of what's

51:28 it in terms of food and et cetera. So, uh of

51:33 , depending on the species, um know, it may be capable of

51:39 doing different metabolisms. OK? so, so it's a matter of

51:47 , it was respiring or wants to , what can I put together

51:55 To respire. In other words, acceptor, right? What's available?

52:02 can it use? Right? Will work? What's most energetically favorable?

52:08 ? Because that's what um that's what be u uh used. OK.

52:16 Is that you speed this up a bit? So that's what you're

52:21 that's what that's what will happen. is most energetically favorable? OK.

52:28 because it's in competition with lots of out there, right? And if

52:34 , that's not the logic you're following be what's most efficient and what's the

52:39 uh beneficial then you're not gonna survive long. So you're gonna combine things

52:44 make bio energetic sense for lack of better word. OK. And so

52:49 is one example of OK, this this, what's out there? Can

52:52 , can I work with this? I get, will this enable me

52:55 grow, survive? Right. um so we're gonna succinate and

53:04 OK? No, of course, doesn't have a table to do a

53:10 exercise, right? Not in So it's got to uh you

53:15 OK. So let's go through the of this. OK. Uh Step

53:22 , I always set everything up with familiar diagram. So I know what

53:27 what's going on here. So basically succinate as a source oxidizing it

53:33 that's gonna be the source to feed chain. On the other side.

53:37 got nitrate, right? So obviously is nitrate, anaerobic respiration is going

53:41 . OK. So that's what's So now in the context of the

53:47 , OK. Um So here's an . So it is the fumarate succinate

53:55 , right? That's our pair. so fumarate is the acceptor form,

54:00 , the builder form, right? we can see that uh both of

54:05 positive reduction potentials will equate to I have an absolute value showing, but

54:11 equates to a negative delta G, ? In both of these, all

54:17 . Put it here. LG negative G, right? So positive reduction

54:24 equate to negative delta G. So we look at that and go

54:27 . Fume rate as an acceptor is bad, it releases energy. But

54:33 looking at Saint as a donor, we have to turn it around,

54:39 ? And so now that becomes a energy, you might think, how

54:45 this gonna work? All right, using a source that doesn't even,

54:48 even release energy, right? You put energy in. So I haven't

54:54 the full picture yet. So I to look at well, what is

54:57 give us? And so you it all adds up to negative delta

55:02 , then it it can work. . So responding with nitrate is pretty

55:06 because it releases a lot of And so that can overcome the fact

55:12 sate is kind of a crappy OK? But it can work.

55:16 ? And so just to throw you know, you know, think

55:20 nature, right? It could be the things that influence delta G,

55:25 ? Concentration of reactant products. So could be that succinate, this is

55:30 not a succinate in its environment. that can equate also to influencing delta

55:38 . Remember if maybe a lot of excess over a product that can,

55:42 can uh beneficially help the delta G . So that can, that can

55:47 something that might be going on as . But the point is it can

55:52 . OK? Because the bottom line this, you know, and that's

55:56 net is a negative delta G. . So uh let's look at this

56:03 . OK. So which statement is regarding redox reactions? OK. I

56:11 that. Oops, bye, I . OK. OK. Let's count

57:15 here. 54. OK. Uh see here. So um OK.

57:33 it requires energy to reduce N AD . Well, we can actually see

57:37 right here, right? Um It take energy. OK. So that's

57:43 . Uh An A DH is a donor. So that's uh here I

57:47 in. So this is acceptor as table would write it right? Like

57:54 and here I just put in the here. OK. So N A

57:58 is a stronger donor than nitrite. N A DH versus nitrate. So

58:05 , you see the difference in delta , right? That tells me that

58:09 of the age is better, So check, that's true. My

58:13 is a better terminal acceptor than That's just, this is telling you

58:19 That's telling you that right here, ? N trait is better because it's

58:26 energy, right? So they're they're all true states, right?

58:30 true. All right. Um Any ? OK. Yeah. Uh Say

58:43 one more time. Oh Because we're , it's asking is uh N A

58:53 , a stronger donor than nitrite, ? Some of the tables lined up

58:58 acceptors. It's a ranking of right? So if we're looking at

59:02 the donor form, at the, the donor of the pair, looking

59:06 the, the um N A DH nitrite, right? There's an A

59:12 nitrite. So to evaluate, we to reverse the reaction, which is

59:16 right here. OK. And so you do that, the plus right

59:23 a minus. So you're gonna reverse um the um sign for the delta

59:30 . OK? Um Just like with snake problem, the SUC Nate,

59:36 made the sate with a negative. we're looking at SUC as a donor

59:41 saw? Oh That, that delta changed to a positive and we

59:45 OK, maybe this won't work because requires energy rather than giving off

59:51 But it did work because my trite the acceptor was quite good. It

59:56 an awful lot of energy and that the band sucks name. OK.

60:02 it's all about adding that stuff up ne negative delta G, that's what

60:08 looking for. OK. Any other ? Yeah. Um All right.

60:17 um all right. So a little about um the actual components that go

60:24 electron transport chain. OK. Um very often you're gonna see molecules that

60:31 things like uh metals that are a part of the electronic accepting and donating

60:39 . Uh iron and sulfur, very atoms in these kinds of molecules that

60:45 involved in redox reactions that um cytochrome uh really kind of the workhorses of

60:56 electronic transport complex. There are these molecules, uh you see a part

61:02 one over here, it's called the group. Um it'll have components that

61:08 hydrophobic because these things fit into a . Ok. These things fit in

61:12 membrane. So you're gonna have parts that are like nonpolar that enable that

61:16 happen. Uh These big cytochrome um also double as not only receiving and

61:28 electrons, but that energy then they as a proton pump as well.

61:33 you see kind of both activities associated these big big cytochrome, I'll show

61:38 a diagram here in a second. uh aside from those big complexes,

61:43 have these smaller organic cofactors like very , you kind of shuttle electrons back

61:50 forth between the the big ones, the overall order. So just you

61:56 , remember that this overall order is from um negative reduction potential, more

62:09 and that's what keeps flow going and energy is used pump protons out.

62:18 . And so again, you just keep feeding, feeding it,

62:21 And so I remember the distinction between many cases, no, the the

62:27 here, right? These are for , if you use time and

62:31 of course, and it can be of the things we use glucose,

62:35 ? So remember that the breakdown of is ultimately where those N A DH

62:40 come from, right. That's that's why I refer to glucose as

62:44 source, right? But it's N DH, that you form, that

62:48 interacts with the electronic transport chain. you don't call N A DH the

62:53 necessarily because they only are produced from food source. They, they're,

62:58 made from a glycolysis in um uh cycle, et cetera. OK.

63:06 But remember it can be things other glucose. We eat all kinds of

63:10 beyond this glucose, other carbs, cetera. OK. Um And of

63:16 , remember that it can be a as well. You can have other

63:21 other than oxygen in that spot where where 02 is. OK. So

63:26 this just real quick to show you coli. OK. And uh this

63:31 a complex uh that's at the beginning interacts with an A DH uh receiving

63:38 , it oxidize oxidizes N A And then it, it doubles both

63:43 a uh receiving electrons but also as protons out as well. OK.

63:52 a little organic molecule shing electrons. so this cytochrome here is a big

64:00 . It is what we call a so of covais because inter it interacts

64:06 the terminal acceptor. OK. So is what it would use in aerobic

64:11 . So remember, e coli can aerobically, anaerobically, you can use

64:17 things, you can use nitrate, can use other molecules to respire

64:21 And if it does. So it switch out that terminal oxalate to another

64:27 that can work with those molecules. . That's, that's gonna be a

64:31 interaction. OK. And so it change cytochrome depending on what's available to

64:37 . OK? But again, this what this is when I've drawn this

64:44 in a simplified form, right back this again, source box,

64:51 uh acceptor essentially what that is is you see on the slide basically,

64:57 ? Here's my electron transport box. ? And source, right? And

65:05 . So this more fleshed out for there. OK. So, um

65:13 . So what I'm gonna do is the few minutes we got left is

65:17 , we're gonna go into the uh the basics of the proton motor

65:24 And what that involves because that's basically of what we're culminating towards here in

65:29 is this is all about this energy the process is used for that,

65:35 ? The proton motor force. So look at a um couple questions

65:41 OK. Um Oops, there we . All right. So the time

65:48 to force across a membrane can be by all of these except so you

65:57 think of the uh the things that proton motor force. OK. Um

66:06 Electrochemical gradient is another way to look it. Um But again, um

66:16 other thing I mentioned a lot is course, that how essential the membrane

66:21 and all this right is all occurring the membrane here around, in and

66:25 the membrane, whether it's your mitochondrial or bacterium, it's a plasma

66:32 What have you membranes are very OK. OK. All right.

66:45 count down here. OK. Uh let us, I'm gonna come back

66:57 this question. Let's take the next . OK. And let's look at

67:03 one here. This is more about required. So what's required to maintain

67:07 proton motor force? OK. Oh , there we go. OK.

68:06 five. OK. So yeah, is gonna be all the above.

68:15 . So um there was in charge that delta P is pro time out

68:22 force. OK. And the two charge and concentration and concentration of higher

68:32 . And of course, that equates ph right ph is all about higher

68:36 concentration, right? So um and , but then of course, you

68:41 remember, can't forget, right? uh what's fueling this right electron transport

68:48 , right? Source of electrons beating and then a uh acceptor is at

68:54 end of its oxygen, right? that keeps the flow going and um

69:00 flow of electrons obviously. So all these things are necessary.

69:04 So I'll go back to the previous here in a second. Uh uh

69:08 basically an we'll answer it as we through this. OK. So um

69:15 not going to do any calculations on test. I just wanted to show

69:19 equation because the two things we're looking here are charge, OK. Delta

69:25 and delta ph OK. And so those in different ways can affect the

69:34 of that proton motor force, How big or small it can

69:39 And of course, it fluctuates like a bacterial cell and it will fluctuate

69:44 depending on conditions. But in any , so it begins with, of

69:49 , a membrane, right? we a membrane here um because we we're

69:54 be putting protons on one side of membrane. OK, creating a concentration

69:59 , right? And that's the first that's the so what we call this

70:04 force is one way to refer to , the chemical force is the concentration

70:08 , right? So it's going to high in this example, high

70:11 low inside in terms of protons. And so as you see there,

70:17 ph difference equates to a difference in Zion concentration, right, 6.5 out

70:22 protons uh higher ph inside. So relative difference is higher outside.

70:29 So that is um so one of , so the chemical force is the

70:36 the tendency for the molecules to want go back down the gradient. That's

70:42 way molecules will go if given the right, high to low. All

70:47 . And in doing so give up , OK. Which we already know

70:52 , gradients are a way to is a stored energy and delta G is

70:56 is a product of that right, down to concentration gradient you up.

71:01 . So that's one, that's the force and the other force is the

71:06 attraction, right protons are positively And for most cells right, positive

71:14 , so you have that attraction then have the concentration. OK. So

71:20 of those combine to make protime motive . And so um so for most

71:26 , there are exceptions here and But our cells are like this,

71:30 of the cells have our net negative inside, right? That's really mostly

71:36 to the proteins in the cell. proteins of course, are huge.

71:40 don't generally exit, you know, cell. Uh so they kind

71:46 and, and the ph inside the , they pretty much just a negative

71:49 . That's where the most of it from. Um But again, that's

71:53 attraction for those protons. OK. having these two forces then charge and

72:02 . Now you just gotta give it way to get in. OK.

72:05 remember being, you know, they're , they are charged, right?

72:09 that's, and going through a hydrophobic bilayer is not an easy thing,

72:18 ? For a charged molecule. So they'll only come in if they

72:24 very, very slowly. OK. efficient enough to do anything with.

72:30 . So we do, we need come in back, all right.

72:33 then we can get energy release and do something with that. OK.

72:37 the way, so the conduit with channel is the A TP A

72:42 Specific for protons. So as they down the gradient um energy release and

72:48 used to pump or to boost a . OK. So remember right,

72:56 uh this process, a TP formation energy. OK. So I've,

73:01 so remember all that goes into this ? Uh donor, electron donor,

73:10 ? Acceptor if it's aerobic respiration, could be anaerobic, right? But

73:15 flow and so remember everything that's over , this could be represent glycolysis,

73:23 away uh formation creb cycle is all that thing there. OK. So

73:30 I've said before, the energy from is what produces a TPS,

73:36 That's the visual of what I'm talking . OK. The metabolism occurring in

73:43 circle on the left, right. those stages we talked about that's where

73:47 produce N A DH S fa DH , that's what feeds the electrons in

73:51 system, the 02 right term So that catts ultimately is what allows

73:59 TPS to form. OK. So so we can we can um the

74:06 referred to um the increase the internal charge, OK? Make the internal

74:19 , negative charge more negative, That's gonna increase the proton motive force

74:26 you, you're, you're, you're increasing the charge difference, making it

74:31 negative. OK? You can um make the external Ph more acidic,

74:38 ? That there again is changing the difference, right? Making the concentration

74:45 says ph 6.5 ph six, That's gonna be a lot more protons

74:51 bigger delta P. OK. Um said just look at the question real

75:00 . So uh this one. So uh true, true. Uh

75:12 that's the exception. OK. If lower the quantity of protons,

75:18 Pump less out, you're basically decrease the difference in hydrogen concentration.

75:25 So that wouldn't, that would not pro motor force. Ok. Um

75:33 . Is any questions we'll, we'll this at the beginning on Wednesday if

75:38 have questions. Uh let me uh me until then or you can come

75:42 now if you want. That's Uh Anyway, we'll see you all

75:46 folks. Ok.

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