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00:00 Yeah. Yeah. Most potent thing do you see up here, it

00:04 pull closed. It's gotta be open you guys have a question. So

00:08 usually forget to do that. So are three things. OK? Let's

00:14 some volume here. Testing, testing hear me. OK, welcome.

00:25 I can see is George Washington staring in the face right now. The

00:30 gonna replace that with uh maybe a of uh Louis Pasteur or something.

00:37 , y'all know who Louis Pastor OK? All right. So uh

00:44 , usual stuff. This is class with one of these first slide,

00:49 ? Uh Remind you of stuff. really nothing uh nothing uh assignment wise

00:57 coming up uh soon, right? the first quiz of these quizzes is

01:04 opens next uh Friday through Monday. The first smart work assignment is not

01:11 until September 4th, I believe Uh So nothing this week,

01:18 we just started, right? um but I'm sure some people may

01:24 added this course in the last day today. OK? If that's

01:28 you won't have access for a day two. But everything's on campus.

01:34 . So if you can just uh you'll have access to everything.

01:38 Remember that uh everything you're seeing here hearing is recorded. OK?

01:45 and I put up the uh mod right in canvas called um lab.

01:52 no le lecture lecture videos, Just go in there, click on

01:55 link and it takes you to uh , that site you go to is

02:00 video points. OK? And so the ones that do the indexing of

02:04 lectures. So you can make it for you to just see the stuff

02:08 want to see whether through keyword search whatever, right? So, and

02:13 you'll have the whole list of recorded as they, um, increase throughout

02:20 semester, right? So, what else? So we got

02:27 clickers, right? So I was in thinking that you could just bring

02:31 clicker that's even unregistered or not have subscription. They can just use an

02:36 to select ABC or. So I that out. So, but if

02:41 do have it and you bring um, and I say clickers,

02:45 , I reminds me, does is anybody in here using the old

02:50 handheld clicker? Ok. Well, good because that's the only reason I

02:57 in this little deal here on my . It's a receiver for people that

03:02 these. Maybe I don't have to that. But everybody got the app

03:05 makes more sense. So, um , so when I say, I

03:09 the mobile app obviously, so uh register it and new subscription if you

03:16 to um again, use Canvas as portal for that, right? Uh

03:24 a, there's a registration link for Solutions. OK? Uh We're gonna

03:29 , we got a bunch of questions . Nothing counts, nothing counts at

03:32 . So if you don't have it , that's fine. Uh But uh

03:36 will have some questions. So um . If you see entry user

03:41 ignore and this is these in any I'm giving you about come straight from

03:47 uh clicker. Ok. So I not uh this is what they're telling

03:52 . So just ignore entry user Ok. So I will upload if

03:57 are. If you got a add the subscription mobile app, I

04:04 upload points tomorrow so that those of that have can rest assured.

04:09 Ok, everything's working fine, So, uh on the 31st or

04:16 the points for the 31st are posted will all be gotten rid of.

04:20 doesn't count for anything. It is for you to feel confident that

04:25 your app is working. You can your point. That's really the purpose

04:29 this. Ok. Until until the . Ok. Uh What else?

04:34 options? So, uh I was an email uh yesterday, I think

04:39 a long list of tutoring stuff. , resources. Um I will just

04:46 that in an email. So I um like I said, I email

04:49 all twice a week. So tomorrow be that second email I'll send

04:52 it'll contain all that information. So if you're interested in that,

04:56 can access it, then there's a of stuff there. So, um

05:01 there's some career center I was told this as well. So it's,

05:06 think relatively new may have begun last . Uh There's a on access.

05:11 There's a little icon thingy for higher . Uh So six is a career

05:19 and there's a slide they gave I'll post that on canvas as

05:23 So definitely something to keep in mind I know. Um Let me say

05:31 400 people enrolled, I'll roughly say plus are want to become doctors,

05:42 , optometrists, et cetera. You to be a to be down,

05:51 ? But you're not all gonna get . I, I'm trying to be

05:55 A O correct point. I'm saying is what I'm saying. That is

06:00 gotta have a plan BC and OK. Yes, I'm not saying

06:06 pursue your dreams. OK? But gotta do so realistically. OK?

06:14 you know, it, it, just the numbers, you know,

06:17 don't know if it's something like less 5% they're gonna get into, you

06:21 to become professional school. So you have backup plans. All right.

06:26 what are your backup plans? you can work in the industry,

06:31 . Biotech company or something. But research isn't for anybody.

06:35 some people just can't stand to be the lab all day doing stuff.

06:38 . So, you gotta figure these out sooner rather than later.

06:42 I don't take what you're, I take a lab that, you

06:44 the labs you're doing in, on , like, aren't, aren't the

06:48 of what you'd be doing in right? Because I worked in the

06:51 for 12 years before coming here. take the lab, you're taking care

06:56 the Great Salt in terms of, , this is the experience to be

06:59 the real world um when you get for one. OK. But um

07:07 beyond that, it is different. ? But you have to figure out

07:10 you like doing that on a day , right? For, for

07:14 right? What else can you Well, you can be uh if

07:18 have kind of a business marketing bent you, you can uh yeah,

07:24 the lab industry supported by vendors, ? That sell everything right? From

07:32 , pipe pits, consumables sector, ? So you can be a sand

07:37 is an option. I'm just giving some examples. OK. So the

07:41 is have think uh think about it , ABC and D options.

07:47 So um and if you think research be your thing, get an

07:54 right? See if you really do it working in a lab. Like

07:58 is gonna be a much more realistic than the labs you take for a

08:02 , right? Go into some professor's and, and do that and then

08:06 see if you like it or Ok. So anyway, uh but

08:10 uh career fair will give you those options as well in terms of internships

08:15 things like that. Ok. So last thing uh I'm assuming one or

08:22 of us have been involved in a where this has happened, right?

08:28 been experiencing a cop? Ok. this semester. Holy cow.

08:34 So I'm, I'm assuming most of are familiar. So um what will

08:39 is one or one or two or who will come up here and do

08:46 for tiktok, right? Is that's what it is, right?

08:48 they do some kind of goofy So um if it happens, you

08:54 , for you, I'd say boo something like that. Um I can't

09:01 to physical violence but so all I do is say please leave and I

09:08 uh police, ok. You can uh police as well. Probably listen

09:12 you rather than more than it was me. So um you and,

09:17 , and this, and this um auto term one, we're in auto

09:22 two, these are prime targets. is where these mostly happen uh in

09:28 100 there's another one in the big, big classrooms is where this

09:32 happen. Ok. So anyway, like you said, we already started

09:36 one of these, I guess, this week. So it could

09:41 All right. So we just to with it. Ok. Um All

09:47 . Any questions before we get All right. So, uh

09:53 ok. So the slides, uh posted all the slides from number

09:57 So chapter. So for 1, 13, 14, 5 and 22

10:07 ? So five and 22 are super um five, more than 22.

10:14 but 22 is only covering a couple sections out of that. Chapter 13

10:19 14. There are more, there most of those chapters. Uh chapter

10:24 , most of most of one, can always just print out the uh

10:29 review sheet, right? And just that value while you're reading the book

10:33 make sure it's sticking with what's on review sheet topics, right? And

10:38 reading stuff that I'm not even Ok. So, and all these

10:42 start with like uh learning objectives. kind of convinced them here because I'm

10:46 gonna go through each one blow by . You can look at these,

10:50 of course, it's a gold free . But what, you know,

10:53 chapter one every microbe course starts with . It's, it's, here's what

11:00 are, right? And so here's they do, here's what they're

11:04 Ok. And all the kind of stuff and we'll go as the rest

11:08 the semester, um of course, back to some of these things.

11:13 so the other point I make is this will be interspersed with questions

11:19 There may be some different, different I throw in that you may not

11:24 directly part of the lecture notes, don't worry about it. Ok.

11:30 is not changing. I'm just trying , my job is the content doesn't

11:35 change that much from semester to but it's my job to go

11:40 you gotta be and present, spruce up for you and hopefully we don't

11:47 asleep. Ok. So, uh that's my job. So I sort

11:52 try to do that and then I about stuff and go can you try

11:56 this time and, and whatever, the content is not changing. It's

12:00 how I presented it. But regardless you see up there will be available

12:05 you, right? I typically call like extra slides or something like

12:08 If you want to see them, have it posted. But again,

12:11 not gonna change the core content that's in the election. OK. So

12:16 see something different, don't reach OK. So, um so like

12:20 said in this chapter, we're basically , what microbes, what are they

12:26 uh some of the players uh involved uh my, my don't worry about

12:33 and stuff. I'm not gonna ask what, what date did you pass

12:39 discover the theory of, of OK. Germ theory. Excuse

12:45 No, I not gonna ask. silly. I'm not gonna ask date

12:49 . So don't worry about that. . I may ask, make reference

12:52 certain scientists. OK. Uh but um I don't have one list

12:59 Yeah. So, so let's start a super easy basic question,

13:05 So unlike most fields, says biology much his Oh yeah, what's that

13:18 gonna be? Went through that You go wow, you see that

13:23 of that and you walk and you be a micro for the most part

13:29 . And so the microscope right? microbiologist, OK? From something very

13:36 looking that we first started with that's labels microscope, two modern microscope we

13:42 in lab electron microscope um force Um That is relatively last 10

13:50 You are making a probe, you put a probe in a solution,

13:54 actually see molecules and stuff with so cool. And there's other, there's

14:01 state contrast and con and bla bla so lots of different developments of microscope

14:06 the past 20 years. OK. just the what I call the modern

14:11 , OK. And really the advancements the microscope and the technology from way

14:17 in the 16 hundreds to now, from the 1500 the early 20th

14:23 That influenced how we look at them rather how we group them, what

14:28 call different types. Identification has changed , in terms of how we've improved

14:33 microscopy. OK. So the first of this, um uh so there's

14:38 be some historical stuff obviously and with all micro called um and uh but

14:49 before then, unknowingly, right, used microbes, beer, wine,

15:01 cheese bread, uh lots of right. Of course, they,

15:05 didn't know what was doing causing this occur, right? We of

15:09 know microbes, various types. Um uh the um obviously the the ones

15:18 get the most attention, I the microbial world, those that cause

15:22 , right? And kind of local you see or, or news microbes

15:28 times of 100 back, right? if, if I park anything,

15:35 right at the end you come out saying, OK. Wow. All

15:39 . I know we got these 100 they're mining compared to the ones that

15:46 good girls, right? And, that is really is, you

15:50 a big disparity, many more are for us. We rely on them

15:54 our own survival. OK? But it's had the bad ones that seem

16:00 be an impact. Millions killed um COVID-19 million, more than a

16:06 died from that. So obviously, are there are they uh some of

16:11 have very negative impact. So, so we use microbes throughout the,

16:17 know, the last 200 years, years, um models for study,

16:24 different processes. That's how we figured , you know, the, the

16:28 do, right? I mean, RN a um protein synthesis and how

16:34 works uh gene expression and meanings of . Um DNA technology, being able

16:41 mix and match genes and put them . This is all in microbial

16:47 OK? Particularly bacterial and viral OK. So, um uh and

16:54 , right, we'll talk more about next time. Uh is, is

17:00 as I said before, our life on it and then I'll hopefully be

17:04 to show you why that is So uh if you haven't just

17:08 I am pro bacteria. OK. , and that's most of us,

17:14 may have said this last time, most of the um our focus in

17:18 is bacteria, archaea virus. Bio because you get, you get

17:27 new periodic systems in your other bio , right? So here you kind

17:30 get the exposure to what parrots are about. Um So in terms of

17:36 and Van Lew Hoek, really the there is is in terms of um

17:45 hook, was looking at tissues, ? Of various types of animals and

17:50 , et cetera. OK. So at these under a microscope,

17:55 Um Man actually was looking at So OK. And so he was

18:03 to do that with this really primitive you see there. And um

18:09 and I don't know uh anything about grinding, you know, make the

18:14 for, for microscopes or glasses or have you. But apparently with a

18:19 at this, you could get something uh I think 300 nearly 300 with

18:27 , with that device remarkable to Uh But I see bacteria.

18:33 So, and he's also very secretive it. He didn't let the people

18:36 how he did this but uh eventually figured out. But nonetheless, so

18:41 kind of kicks off then the whole er, of microbiology. Um Here's

18:47 question. Let me go open. right. And so here, let

18:51 pause that for a second while you , OK, I want to read

18:56 those. So um we'll learn, this hundreds, right? Um

19:10 you uh put some pond water, ? The pond water, you can't

19:14 anything in it, but you give some, then you're gonna match up

19:18 your hold down what that would do somebody seeing for the first time,

19:27 know, again, it 1600 You think something that the devil made

19:30 ? And it's like, oh my , what is this? Right?

19:33 that led, led us down the for a while in terms of the

19:36 where they, where do they come ? Right. So, um all

19:41 . So here uh let me turn on. So, uh this kind

19:48 relates to kind of the power of microbes in our environment.

19:55 So I'm gonna guess always guess what answer on these. I'm gonna say

20:06 say that it's 90%. OK. see if I'm right. Yeah,

20:21 than 90% but the majority for OK. So yeah, none of

20:25 are free. OK. So um , you, you always give that

20:31 associated with the micro found everywhere. it's not that they're prescriptive, they're

20:37 . OK? Uh The microbes that on you in and out outnumber your

20:43 self by about 10, 10 to , right? So you, you'll

20:48 more. Oh the microbe in your cells, right? The microbiome and

20:55 very microbes supply uh 50 to 80% the earth when you think of uh

21:04 um bacterial photosynthetic pipes, right? of action in our atmosphere.

21:15 Um Micros convert uh more than like convert 90% of nitrogen from earth's atmosphere

21:26 usual forms, right? And that's of the main, obviously, both

21:30 these ce V are important in the of these chemicals they produce the option

21:35 breed, right? So um and of the molecules that contain nitrogen in

21:42 DNA proteins, right? And all uh is one of those forms that's

21:48 scarce on the environment, they're pretty . So you don't really see excesses

21:53 it. OK? But as is the case, man, woman,

22:00 come in and affect the balance. . That's where you can be very

22:08 . Ok? In a number of ways. Uh we'll talk about that

22:12 but um the point is um right? Are wonderful. Things are

22:18 crops that we uh some water, ? And they're good to go.

22:25 . But what they can't do is their own uh in nitrogen phosphorus is

22:31 they need as well. So you on those minerals in the soil.

22:36 are what are the primary drivers of these elephants? Right? So without

22:43 , you only have your plants without . Those of us that are,

22:46 , are strict carnivore, but don't meat. But you're out of love

22:51 because the, the, the meat eat is eating that plan,

22:56 So it all connects. OK. , um and lastly f right.

23:04 , no, we have only maybe point. There are ways to figure

23:11 what's out there without having to culture . OK? And we'll discuss that

23:17 a little bit. OK. So we're gonna get kind of get into

23:20 definition of what a microbe is. right. So let's take a look

23:23 this one. OK. So what consider a microbe? OK. These

23:28 here, uh sea monkeys already heard sea monkeys. That was a

23:38 So sea monkeys, um I didn't they were, I mean, I

23:43 those when I was a kid back a comic book and buy these things

23:46 look for like a buck, See, like who, you

23:49 have some of those so that the , right? All they are

23:56 right? Li shrimp. They like tiny. Ok. Um, the

24:01 and they're still making these things. the guy is like a millionaire a

24:04 times over from selling Brian shrimp, monkeys. So, uh, so

24:10 where you buy and marketing, Can come into play, right?

24:12 rich. Um OK. And ok. Um H is all the

24:50 ? Ok. So we have to into this. Ok. If you

24:55 uh a you are correct. Monkey pox is the microbe in this

25:01 . OK. So we'll go through there's, there's because you have to

25:05 that in biology, right? Uh everything fits necessarily in its own little

25:14 , right? There's always gonna be rare. OK. And the definition

25:21 what's a microbe can create that? . So we'll, we'll go through

25:27 , right? So generally, uh obvious things, right? Oh,

25:31 look at this one. I forgot had this in here. Let's look

25:33 this one too. OK. um, microscopic. So you have

25:40 sample under a microscope, it's a right over shaped one by 10

25:45 no discernible organelles. So what is most likely to be? Yeah.

26:01 if you have a sample from environmental from MARS that maybe something you,

26:06 think about hm. OK. I'm count down here. I'm seven.

26:20 . Remember we stay some count. you want to see if you get

26:23 points uploaded? All right. So if you answered G who are the

26:35 ? Yeah, I turn A so is correct answer. OK. So

26:39 is the kind of the size realm , of pro Caros. That's what

26:46 and archaea are pro caros. So um so obvious things like what

26:52 requires a microscope to be a cure I have a no brainer there.

26:57 ? Uh Usually it's an entity that's so the numbers, it's a micro

27:10 and uh replicate within this environment, energy um and survive that way.

27:18 ? We don't call things like the skin tissue, right? Or your

27:24 tissue cells that make up your own . We don't refer to those as

27:27 , right? Because they're part of larger agency, they can on their

27:32 outside the box, right? So that reason, but there's an exception

27:38 that as well, right? Which why this is asterisk and that's

27:43 right? So viruses, we do microbes, you know, electron microscopes

27:49 , right? But you have particular of living, so to speak.

27:56 . Uh We'll talk about that in second. So even with the definition

28:01 what I'm calling a microbe sailor right? Lives can live survive on

28:05 own that um have um certain arrangements themselves and where to go like,

28:15 the coccus micrococcus and clusters. Um the, the species itself is still

28:22 micro. OK. Um And it be other arrangements of these cells as

28:27 . OK. But you should, know, be familiar with the size

28:32 here. OK. Uh, pros and materials. I just generally

28:38 pretty, this again, there's always be some variations, there are pros

28:43 can be under a micron in There's a few, right? So

28:48 just gonna have some outliers in each , but for the most part,

28:52 good, pretty good range of OK. Um Now is there,

28:58 you have a, could you have microbe that's um smaller state than 10

29:10 ? Do you have something smaller than ? You could say no is,

29:22 let's say 10 I I'm sorry, bad. I meant to say 10

29:33 , sorry, not my me, Na Na later. Yes. So

29:46 10 narrow it. Yes. You we just look at the uh we're

30:00 nanometers right here, right? Should 10 nanometers. Boy, I don't

30:07 you couldn't be a um I think be a car cell because look at

30:12 structures of a mitochondria or chloroplast. things are gonna be bigger than that

30:16 size, right? Um uh RBIs actually are borderline, they're probably only

30:25 . So you have to be able fit the essential, the same half

30:30 a cell that size there is gonna a, OK. Uh In terms

30:34 what can fit in it, Because you have to have the

30:37 right? Chromosome, uh um bio cetera. So that some of these

30:44 structures are, are too big to in something that size. So they

30:48 , there can certainly be a lower . OK. All right. They're

30:53 heavy on questions at the beginning OK. So, uh which is

31:00 regarding microbial types. OK. So get algae, bacteria virus or key

31:05 proto when you carry, right? these are the, the micro uh

31:11 most time on. But uh you know what the other types are.

31:21 , so terminology doesn't throw you right . Like this is one term we'll

31:29 about a lot like hitter troph. is that? OK. Um The

31:36 , I think we know what that . Yeah. So um let's

31:51 Mhm OK. All right. Let's down. I had to read it

32:01 to make sure I knew the answer . 10,010. All right. 1

32:28 G. All right. So what the two that are true? B

32:36 B and F? Yeah. all right. Um So what,

32:48 ? Yes, thank you. Uh I've been teaching it for so

32:53 . Hetero auto thing is something that have to keep growing in the

32:58 OK? Especially when we get the , right? 13 and 14.

33:02 you are heter trope, you're hetro , why do you close off the

33:06 of you eat? What? so it's not in terms of,

33:19 , nothing for them, for Why are you? Yeah, you

33:31 like. So what's, what's the do you sound like? Was the

33:38 of the anglo across the park? two, you're out of choice.

33:58 more complex. Sugar, fat That's what you eat, you.

34:06 . So, um, we'll come to that time and again in the

34:10 , in 13 and 14. So, um anyway, so,

34:15 , b and uh for the only choices here, OK. So you

34:20 basically phototropic. All right. So two protozoans are heterotrophic. Um uh

34:28 carry out uh archaea are found in habitats, typically, not always,

34:36 let's just kind of look at some these different groups. OK.

34:40 uh we can kind of classify in of cellular versus a sailor, a

34:44 , of course, are viruses and don't consider themselves. OK. Um

34:51 , among the CYO types, these groups, OK. The bacteria here

34:57 then among the ace type um All right. So I'm gonna,

35:05 need some fun and mushrooms, Uh these certain modes. Um And

35:16 um OK. Here is the I think we have basic Rios,

35:22 ? So you should know that um might lack of organelles and proo pros

35:29 have one single circular chromosome. UO mostly in your multiple chromosomes. Um

35:37 , uh, is very diverse in of metabolism. Ok. Um We'll

35:42 into that, uh, classified as . OK. But not all of

35:51 sit that. Well, you have in your, in your gut.

35:55 . But a lot of them do , are, seem to inhabit these

35:59 different extremes of temperature and ph and . Ok. So, among a

36:04 , so you have viruses, we have entities called viro and prime.

36:09 talk about those later. But these basically um thyroids are just rnarn A

36:18 the unit, the is protein, a protein. That's it, it's

36:23 very, very basic structure. All . So viruses are a little more

36:29 . OK? Um And so let see here. OK? So the

36:34 is basically a little sack carro protein contains a genome but not a whole

36:41 else. OK. So um arch we can, you can take all

36:48 archaea and pretty much put them in , in three groups, right?

36:53 we got the and he, he so, right? So the temperature

37:03 ? From a and super extreme the hybrid cloud, right? Some grow

37:10 boiling water um fan, right? talk and we'll talk about these,

37:16 three groups in different contexts in this , about when we talk about they

37:22 unique uh membrane and stable or high advantage if you talk about in the

37:32 of those sort of treatment. And a couple of other areas. Um

37:37 you can also combine um featured by , I mean to be a fan

37:44 and the. So you can be the and also be a the

37:50 So you, you have these combinations different uh are talking about in the

37:56 of photosynthesis. They have a unique of photosynthesis, different way different from

38:02 type of OK. So they can very high salt. You see them

38:07 the there's naturally occurring bodies of water are very salty. The red

38:12 red salt lake, obviously. But um the uh uh when, when

38:20 use seawater for they manufacture salt. they have shallow pools of seawater that

38:25 get very uh concentrated and you'll see often growing here. They have like

38:31 , a purple appearance. So it's obvious you're going to buy your

38:36 And so um viruses, right? we call it the aid sailor.

38:43 talk more about viruses in uh few yet. But um they on that

38:52 though, is it living? Is not? OK. So what's the

38:57 that they are? Mhm Thinking about terms of what discouraging violence that

39:13 What's the, what's the environment for ? Mhm You know, in the

39:20 the environment that cell, they host for most of their, so

39:27 their environment is cell, then you say OK, it's not this,

39:32 worth reproducing but you, but outside that environment, it's not Ok,

39:39 not reproducing. Ok. So, it really alive? Yeah. I

39:45 , I'm sure on that door handle there as far as the virus is

39:49 on there. Ok. Um, know how, how long they stay

39:55 ? Right. And by alive, mean, is just gonna be sitting

40:00 and the door handle now when you it and will that virus can be

40:06 to, uh, migrate to your , its specific host cell and

40:12 Then, yeah, it's, it's like suspended animation, right? Until

40:18 finds its host, then it quote alive, right? So it's kind

40:21 the nature of a virus. And viruses have various um oh,

40:29 that they're viable and may be able still infect it to, but it's

40:35 outside of the house. Um I COVID has been said so much.

40:39 think he can survive on a countertop weeks, I think. Right?

40:45 If you, of course, you , you can hang out in the

40:49 . So viruses vary depending on their of, of uh whether so typically

40:54 like uh HIV and those that cause S those are more susceptible to drying

41:01 and not surviving outside their host. are more robust. It just

41:06 Ok. But again, when they're the host, it's like you can

41:10 do anything but they still be, fact. So, but they are

41:16 , we still call them microbes. . All right. So here we

41:21 in kind of some variations, So you kind of just Oh

41:33 And so definition of microbes are OK? You can have what we

41:38 super size cells, right? Thom . OK. Um That's that,

41:45 , that's a bacterial cell. They just grow, they, they

41:49 up with gas, OK? Um if you're gonna identify it, you

41:55 still be looking in. So you this but the resource for really all

42:01 Caros, the book you go to see what have I got.

42:05 is called man, right? And contains the whole all the known.

42:14 because this is still for micro, this variation right? On the bacterial

42:22 you like, it's just, it's this, I think she just said

42:28 . Oh, so that's a, is actually a single cell OK?

42:35 , right? We call them see sometimes. OK? And how we

42:42 the fills up with cytoplasm, And it's full of nuclei if you

42:46 even know this full of nuclei, ? If you burst a bubble and

42:50 nuclei will pop out and then they to form individual more bubble,

42:56 Apparently it's a, it's a, a, it's a nuisance that those

43:00 have aquarium type of deal with. . So I guess it's like don't

43:04 the bubble, right? Let you it. All right. But um

43:08 again, example of something that's, don't need a microscope to see

43:11 OK. But for other algae you do. OK. Um I'll come

43:16 to probably buy a margarita in a . So, uh communities,

43:23 Uh If you have microscopic, but congregate aggregate together it can be such

43:33 large assemblage of microbes and there's so , it just becomes visible to make

43:38 out, right? A colony on plate, a biofilm. OK.

43:44 The biofilm itself is not, it's up of my call me out of

43:51 , not in microbe, but it's up of, right? So it's

43:54 of that um think of it that . OK. And I already mentioned

43:59 cells that are in tissues, Like a a muzzle cell isn't the

44:04 , OK? It's part of a , OK? Tissues, tissues,

44:09 , right? Uh micro animals, ? The sea monkeys, right?

44:13 are actually the brine shrimp and when uh put them under the right

44:18 the eggs hatch and it'll be right you see the microscope, but it's

44:23 a multicellular organism just like these things water bears. OK. So uh

44:31 , not microbes. So, so but you know, so just be

44:37 of, of the difference. Um Let me just show you,

44:44 want to show you just for information . OK? Uh Very interesting because

44:49 you look at Margarita, here's a organism, right? And here's a

44:54 section of it, right? So a cell, right? Micro

45:01 micro cell you know, of any living thing depends on these molecules

45:09 do stuff. Right? And with proteins, right? So, uh

45:18 are made in the cell, they do their thing and because they diffuse

45:23 the cell, so the cell all right. But if you're a

45:28 huge cell, you can't rely simply making proteins here, they'll refuse and

45:34 whole is they will function. what do you do if you're a

45:39 cell like this when it does, actually has it's, it's chromosome and

45:47 multiple copies of it. All And the copies are housed in these

45:53 here throughout the whole length of the . So that's so you get a

45:57 synthesis occurring all along the cell, ? So the whole, then the

46:03 cells happy, right? Because you rely on something the to supply all

46:08 uh because it's so big. But we have the like this, then

46:12 works right? For a big OK. I thought that was

46:16 So anyway, what this guy does a preview to metabolism coming up in

46:20 little bit is um this guy uses two S and hydron sulfide oxidizes it

46:30 sulfur elemental sulfur at the same So as it does this, this

46:36 becoming oxidized. That means what's being begins with an E electrons,

46:46 So electrons and then these go to nitrate reduction to night trite.

46:57 And so this is the way it right in our system. You will

47:04 replaced by what we're gonna have for today and we're gonna have for lunch

47:13 , you know? Oh, what sandwich? So the sandwich take the

47:18 of H two S, right. ? You need to break it down

47:22 electrons from it. All right. . But uh you're gonna use that

47:30 source. You eat as electrons and you follow it too to what,

47:37 takes the place of hno three in system? Hello? Oxygen,

47:45 So yeah, so you breathe right? And then in your system

47:49 takes electrons formed water, right? this guy breaths they know three,

47:54 ? Anaerobic, right? That what do, there's more aros on this

48:00 than there are arrows by far. . This is one way to do

48:04 . And that's that. So this thing fills up. Oops that's not

48:09 , fills up at nitrate. That's reason why it's so big and it

48:12 three fills up with the gas and can use it as a like a

48:18 tank, right? Super tank. it's back is a scuba tank full

48:23 nitrate. So you use that to and survive, right? And so

48:28 see how elemental sulfur accumulates um sulfur Granules, I covered it up

48:37 here. So that's the byproduct of oxidation. OK? So I'm not

48:44 set you a vial Margarita metabolism, ? But we're gonna visit, obviously

48:48 these concepts, right? And 10 to 14. OK. So

48:57 . Don't, don't be scared. right, I'm gonna try to make

49:01 palatable. OK. Um The point there's lots of, there's more things

49:06 metabolize this way than, than metabolize us to be honest. OK.

49:11 uh we're not unique. Um So my, like my,

49:24 So you, you were exposed to back in fifth or sixth grade,

49:32 would assume, right? And taxonomy how we group organisms and whatnot.

49:38 so with microbes, it can be little bit complicated, particularly with back

49:42 pro Caros because they don't reproduce right? A big portion of,

49:48 know, species, species are defined uh essentially production is often a part

49:56 the definition of a species, But that doesn't happen with bacteria.

50:02 OK. So you rely on, had to rely on for the longest

50:08 . What are their features? What the metabolic features? What can they

50:12 , what they produce these kind of , these kind of similarities and

50:16 OK. And of course DNA, discovering DNA and then being able to

50:21 and manipulate, study DNA in the or sixties, seventies. And then

50:27 use that as the standard figuring out between organisms. OK. How similar

50:34 their DNA? OK. Especially since been able to come out with sequencing

50:39 rather quickly these days and especially among , bacteria particular, you have small

50:46 , you can do this relatively, quickly. Ok. So, um

50:51 looking at DNA similarities to classified organisms so historically, OK. And you

50:57 , 1600 um and for anything, could be classified as a plant or

51:05 animal, that's what people could see and animals or actually another category that

51:10 more like rocks and things like that in, right? So, um

51:14 was like if it was like like they put it in that

51:17 but mostly everything was plants or right? And so fungi, fungi

51:22 also in the plant kingdom, So then in terms of the

51:27 right? Uh eight mid 18 when all microbes were located that the

51:36 blasted through, I was studying It was still an era.

51:42 And I didn't study microbiology in 18 . That was early eighties.

51:48 So um the uh uh so advancements in micro what new drives?

51:57 . And so within about 40 50 later, then they looked at one

52:06 and go OK. There's these two cell types, caros and E

52:12 OK. So what would at that that that instruments would have been

52:24 Which one, which kind of microscope microscope is what is developed in the

52:32 ? So there, of course, that thing, you could, you

52:36 see a nucleus, you could see organ else you could see that these

52:41 two very different cell types, And so now we have to

52:45 Um, and so basically this group with the name. Uh, so

52:54 name was retained the EOS in Moro was put out are Kingdom.

53:02 So, cos then, so the stuck with those that were the other

53:09 . That's so, um, then in the sixties, he used to

53:14 and pulled out a fun guy. realize they're not plants, if anything

53:19 to drive our laid up and your grows. Ok. So,

53:24 now that stayed pretty much like this these, with these kingdoms uh up

53:30 the seventies. Ok. And it wasn't until the eighties when it was

53:36 realized that there were actually two groups pro and so the use of the

53:47 was ok. So just to refresh up, two units are small.

54:00 smaller one, the price is is the, it's called the,

54:06 the term of mass. So bigger value is a bigger basically,

54:10 So, um, the, that you, so not the party itself

54:16 the remember that, yeah, jeans being you close the pros,

54:24 But there are certain uh certain modules the, the gene codes for an

54:31 A, the RN A is And that's true for transport DNA,

54:38 . Um certain other types that the A, right? And so looking

54:43 the DNA gene for the, that's what we're using DNA that codes

54:50 that R A. OK. And that became um and that was

54:57 All right. So uh uh now of one of those, he was

55:07 that lab, he was him and P I were the ones that discovered

55:10 . So he uses this technique. . And so this term molecular

55:17 right? So the choice for this the molecule to look at,

55:22 it's gonna be kind of a dumb . But I, so let's say

55:29 wanted to look at his history, at the history of transportation and human

55:40 . You had to take one feature all the forms of transport and went

55:45 back. What's that exactly? A ? A man probably had a car

55:56 a wheel on it. OK? that wheel you, so you will

56:02 back in the test uh a a , a a chariot, right?

56:09 Roman Times. Um certain, so writing to me but things like the

56:22 like, but that you can look , you know, it's a horse

56:33 car from the 10,000 VC or right? So we have we go

56:38 and tie these two specific times and that goes Z Maranggo, you can

56:47 a lot of changes to a wheel time, right? It to change

56:51 like the the actual thing mechanism to it spin better or something like

56:56 but you're not gonna make it into square, right? That's, that's

56:59 it is so similar. Don't you tinker too much? What does it

57:05 ? It, it is responsible for you make proteins and if a cell

57:11 do that, it's dead, so can't think too much, you can

57:13 some changes. That's why we use answer they call it like. Does

57:19 make sense? So, um so is really kind of become the gold

57:25 , you know, you may have of the tree of life.

57:28 we're classifying all life is this is you OK. And so this just

57:34 you kind of a two dimensional picture that molecule, right? So when

57:39 looked at this, they can see pro caros that there were differences and

57:46 groups had uh crnas that were different the bacteria uh type of tone

57:56 This is this is the actual And so um and so this the

58:01 they would highlight when they do comparisons what's shown by the arrows here.

58:06 . Those are the areas that require more changes more rapidly than other

58:12 of the molecule. OK. So what they use for comparison. They

58:16 see. Wow, we got like different groups of then we have

58:23 OK. So huge at the OK. So that that part of

58:31 domain, OK. So three, ? And since found out that there

58:42 similarities between these two archaea and you that bacteria don't have OK. And

58:50 um and some of these are shown . OK. So we've got um

58:57 you make a mistake even though there's similar between A and cars, mostly

59:03 terms of the information uh transcription OK. There's some similar um but

59:15 they not that, that central characteristic a nucleus? OK. So they

59:23 have, they, that would that's what essentially makes them a pro

59:26 that nucleus. And uh of they're also very uh diverse. Like

59:35 we saw, uh Akea tends to kind of these um environmental areas that

59:42 call extremes of ph temperature and et . Uh Interestingly, uh one thing

59:53 not known for has not yet been is one that causes human disease.

59:59 no AEA that cause human disease uh in a way makes sense, although

60:04 do have some arch in our um none have been shown to cause

60:09 , but the vast, the vast of archaea tend to grow like an

60:14 temperatures or these weird extreme conditions that bodies don't have them. OK.

60:20 that may make sense in that But there is no archaea that causes

60:23 that we know of uh even in . OK. So um is uh

60:34 there um I kind of, I a question about just the image from

60:44 last Yep. Yeah. Yeah. there's still some debate. I,

60:54 think this has been redrawn since So that, that, that

60:58 that there would be a, you're used to seeing something more like where

61:02 should be a defined route. And I think that's, that's more

61:08 how it is. I think there's , there, so a lot of

61:10 taxonomy stuff is fights between different groups , oh, I think it's this

61:15 . I think it's that way. . So, sometimes how they resolve

61:17 is. Ok, we'll just draw this right to appease everybody,

61:21 So I think the evidence is mounted then. That, that in that

61:25 more like this where this is bacteria first. OK. Then uh a

61:39 and E caros later. OK. bacteria, the consensus for most is

61:47 bacteria split out first, they're the , right? Then IKEA and you

61:52 that that's a good question. So any other questions? OK. So

62:02 OK. In the theory uh yeah, so the history of,

62:06 microbes, of course, around with for the long, the first form

62:12 life to evolve uh new kaos. mhm No, no. And um

62:24 uh uh so of course, we look at and see in terms of

62:31 uh that is not as the fact there is a cell, right,

62:41 to the uh in folding of membranes , to cover its um chromosomes,

62:47 a nucleus, right? So we it pre eo but then having an

62:52 symbiotic relationship, which means symbiotic We all know what that is,

62:55 know, organs working together, so speak. Um but this an endo

63:01 intimate, you're inside, very intimately , right? So endo symbiotic relationship

63:08 when these rio cells engulfed a um respiring, aerobically respiring bacterium and

63:21 it, it uh formed a symbiotic with OK. And then shortly

63:27 the bacteria inside there kind of degenerates terms of OK, I need all

63:33 gene functions I used to have when was free living because I'm the host

63:38 a lot of its functions, But still retains the energy producing

63:42 right? So, and then eventually into a mitochondria. OK. And

63:47 similarly, with a photosynthetic bacterium, too becomes engulfed, right? And

63:54 over the time lose, lose many its functions but retains the photosynthetic,

64:01 . So, and it evolves into chloroplast, right? And we've looked

64:05 modern day uh uh etic cells, cells and animal cells and we can

64:11 the organs themselves or by the time have DNA in them, right?

64:16 whole chromosomes, but they have DNA them. Uh They have also,

64:22 . So these hotels used to carry some from the protein express are used

64:28 the. But um also that new during mitosis, the uh DNA got

64:37 replicate was so true due the organ now. Don't take that to

64:42 you can take a mitochondria slop on plate of the Petri dish and you

64:46 growing bacteria. No. Right. in the context of mitosis, they

64:51 . OK. So uh all that that um that before now.

65:01 Right. And so like I uh about three, almost 4 billion

65:08 ago, eos about 2 billion years . OK. So um hey,

65:18 uh OK. Genomes. So we'll more about this in the section on

65:25 . Uh We, we'll toward the of the semester, but you

65:29 they are easily Asian uh study that development of the cell grandpa or gram

65:45 . We'll talk about that later. you know, we know a lot

65:48 these organisms and about all types. uh we can see we can look

65:54 genomes, we can see, you , there's two mechanisms of inheritance,

65:59 ? You're gonna have uh a cell divides, right? And then of

66:05 , each cell is a copy of parent cell, right? So whatever

66:08 genes are in the parent cell they end up in the daughter

66:14 That's what we call vertical transmission, ? Like how you inherited your genes

66:17 parents vertical and share genes with other in the population. All right,

66:26 so OK, so you can have that transfer genes between types,

66:32 not related to. And that 20% this genome probably received the keys from

66:41 of these mechanisms of what we call gene transfer. So um so bacteria

66:49 for doing that for materials in OK. That's why you often see

66:53 feature bacterial type has spread to types are not even in the same taxonomic

67:01 , right? Nitrogen fixation is one those right. You go take nitrogen

67:04 the atmosphere and bring it in and it to ammonium, essential part of

67:09 nitrate side, right? That feature is seen in things like bacteria related

67:14 e coli and things related to something different still bacteria. But you know

67:20 tells you, oh yeah, this have been transferred through one of these

67:23 , right? So very common in . So that's how they get

67:27 the sexual reproduce to generate variation like do. So they have these mechanisms

67:33 generate this variation. OK. so we use the knowledge of genomes

67:38 course to to pick out uh you , and we could be cultured from

67:50 is or for micro biology is have a sample isolate or microbes,

67:57 , archaea grow them up, study , right? But not everything,

68:00 few. Actually, you have to you're able to do that,

68:04 So what do you do? What you, what you do is you

68:08 menos? OK. And so what is you take an environmental sample and

68:13 basically just blow it up, take in there. Lysol cells and extract

68:18 the DNA, right? You take the DNA in that with a.

68:22 right, all the DNA is in , right? Then you use the

68:26 of, of cloning gene cloning and take those fragments and you put them

68:32 known pieces of DNA vectors. Mhm. Now you basically have a

68:40 right of in sequence as you found that sample, right? So you're

68:46 representing all the life that's in that . OK. And so we of

68:51 , have large databases of information that been collecting for decades, right?

68:56 we can see this here compare to we know. Oh Wow.

69:00 It's, it's very similar to this . So it allows you to identify

69:05 out there without having a culture which can't often do, right? And

69:09 a reason for that. Um I'll I'll talk about that later, but

69:14 can do different things with this right? You can use it to

69:18 the DNA and see what it is similar to that's out there in the

69:23 or you maybe you just interested in of the capabilities of the organisms in

69:28 soil or it's whatever the sample right? They have some kind of

69:32 they make that I can exploit and millions of dollars from or whatever.

69:37 you can figure these things out using technique. OK. So the point

69:41 you don't have to culture, Put it on a Petri dish because

69:44 may not even grow or left it . It just depends. OK.

69:49 um the OK. Any questions about ? All right. So let's look

70:00 this kind of be the turning point . And so take a look at

70:06 slide. What are these examples Ok. So you got a goose

70:23 but apparently found on trees in this this piece of artwork that resemble geese

70:30 some reason. And lo and they flop off the tree into the

70:35 and become geese. Ok? And was actually a barnacle goose.

70:41 On these other weird weird um OK. Dust creates fleas. Think

70:49 Houston. Well, we haven't had and I can't remember how long,

70:53 I guarantee you the next deluge of we get. What are you gonna

70:56 ? Flopping around on your subdivision, frogs everywhere, right? So rain

71:03 Houston dirt equals frogs, right? , uh I don't think so.

71:11 , uh these of course, are of um is, it's not

71:21 the opposite of biogenesis. OK. isn't actually even a, a

71:27 the correct term is not here a generation. That's my combustion.

71:34 Um uh 10 is think of the part of life occur without parents.

71:44 popped up all of a sudden. . So the spontaneous generation comes

71:50 take, think of microbes. And you discover microbes in the 16

71:55 . You go, oh my Where did these come from? That's

71:58 kind of kicked off all these crazy . OK. So we'll um it's

72:04 good place to stop folks. We'll talk about pasture and his antics

72:11 time. Ok, folks. See see you Monday. Tuesday.

72:31 with the biofilm. The biofilm is a micro but it's made up of

72:40 . So anything that's made up like like the Petri dish with the colonies

72:45 bacteria, the colony wouldn't be a . Got it. Thank you.

72:57 is my first class. Um So said have access to the book and

73:06 small uh Yeah. So what if not in ac a program? What

73:10 gonna do is you still just access the canvas? But you'll be prompted

73:17 say, ok, here are your . Exactly. So that's,

73:23 that's why you gotta do. Yes. Correct. So, even

73:29 you are in or not, if in, you would get an email

73:33 them saying you have to go. . What bookstore is and it that

73:48 . Yeah. Yeah. Yeah. . Yeah. Uh I got a

74:04 about the specifically uh creating the human . Is that, is that?

74:11 So it's like impossible for our I don't think it's impossible, but

74:15 just, it just has not yet discovered yet. And the source of

74:18 disease. Ok. So, from we know. Yeah. Yeah.

74:22 right. OK. Right. There's no, no, I was

74:28

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